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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5745-RA through 18771 annotations produced 1 hits



(CG5745):

Annotation Number : CG5745
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038855
Gbrowse : chr3R:16927935-16930835 (+) // 100.0 //
Probeset : 1631130_at
Accessions : protein= NP_650941;, nucleotide= NM_142684;
Pathway : engulfment // inferred from mutant phenotype /// 0032313 // regulation of Rab GTPase activity // inferred from electron
Interpro : 0005622 // intracellular // inferred from electronic annotation
FlyMine data for FBgn0038855.
BDGP gene expression has embryonic in situ data for CG5745: 5 pix of staining in 1 body parts.
BioGrid reports that CG5745 interacts with CG8230 .
TRiP has 1 RNAi stocks for FBgn0038855 available for purchase.
VDRC has 3 RNAi stocks for FBgn0038855 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain94 ± 24 of 4 0.70Down
Head96 ± 74 of 4 0.80None
Eye57 ± 24 of 4 0.45Down
Thoracicoabdominal ganglion93 ± 34 of 4 0.70Down
Salivary gland333 ± 154 of 4 2.62Up
Crop115 ± 24 of 4 0.90None
Midgut101 ± 44 of 4 0.80None
Tubule114 ± 34 of 4 0.90Down
Hindgut79 ± 34 of 4 0.60Down
Heart90 ± 24 of 4 0.71Down
Fat body90 ± 154 of 4 0.71Down
Ovary238 ± 34 of 4 1.90Up
Testis48 ± 24 of 4 0.40Down
Male accessory glands135 ± 54 of 4 1.10None
Virgin spermatheca73 ± 44 of 4 0.58Down
Mated spermatheca68 ± 24 of 4 0.54Down
Adult carcass104 ± 24 of 4 0.80None
Larval CNS158 ± 124 of 4 1.25Up
Larval Salivary gland112 ± 64 of 4 0.89None
Larval midgut101 ± 44 of 4 0.80None
Larval tubule417 ± 354 of 4 3.30Up
Larval hindgut105 ± 44 of 4 0.83None
Larval fat body130 ± 154 of 4 1.00None
Larval trachea102 ± 64 of 4 0.80None
Larval carcass107 ± 54 of 4 0.85None
S2 cells (growing)220 ± 94 of 4 1.74Up
Whole fly127 ± 104 of 4

Looking for CG5745-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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