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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5746-RB through 18771 annotations produced 1 hits



(CG5746):

Annotation Number : CG5746
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039186
Gbrowse : chr3R:20171506-20174509 (-) // 100.0 //
Probeset : 1627245_s_at
Accessions : protein= NP_001138106; /// NP_001138107; /// NP_651248; /// NP_732983;, nucleotide= NM_001144634; /// NM_001144635; /// NM_142991; /// NM_170140;
FlyMine data for FBgn0039186.
BioGrid reports that CG5746 interacts with CG8368 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain411 ± 134 of 4 1.40Up
Head146 ± 74 of 4 0.50Down
Eye113 ± 94 of 4 0.38Down
Thoracicoabdominal ganglion370 ± 224 of 4 1.20None
Salivary gland203 ± 114 of 4 0.67Down
Crop155 ± 14 of 4 0.50Down
Midgut130 ± 54 of 4 0.40Down
Tubule144 ± 34 of 4 0.50Down
Hindgut143 ± 54 of 4 0.50Down
Heart107 ± 74 of 4 0.36Down
Fat body173 ± 154 of 4 0.58Down
Ovary739 ± 134 of 4 2.40Up
Testis31 ± 14 of 4 0.10Down
Male accessory glands284 ± 44 of 4 0.90None
Virgin spermatheca114 ± 84 of 4 0.38Down
Mated spermatheca137 ± 84 of 4 0.46Down
Adult carcass121 ± 154 of 4 0.40Down
Larval CNS778 ± 354 of 4 2.57Up
Larval Salivary gland404 ± 54 of 4 1.34Up
Larval midgut152 ± 24 of 4 0.50Down
Larval tubule120 ± 74 of 4 0.40Down
Larval hindgut228 ± 84 of 4 0.76Down
Larval fat body116 ± 74 of 4 0.40Down
Larval trachea252 ± 264 of 4 0.83Down
Larval carcass235 ± 94 of 4 0.78Down
S2 cells (growing)402 ± 94 of 4 1.33Up
Whole fly302 ± 54 of 4

Looking for CG5746-RB. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime