FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG5748-RA through 18771 annotations produced 1 hits

Heat shock factor (Hsf):

Annotation Number : CG5748
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0001222
Gbrowse : chr2R:14017798-14022136 (-) // 100.0 //
Probeset : 1626844_at
Accessions : protein= NP_001036555; /// NP_001036556; /// NP_001036557; /// NP_476575;, nucleotide= NM_001043090; /// NM_001043091; /// NM_001043092; /// NM_057227;
Pathway : DNA-dependent // inferred from electronic annotation /// 0006950 // response to stress // inferred from electronic anno
Interpro : 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from sequence or structural similari
FlyMine data for FBgn0001222.
BDGP gene expression has embryonic in situ data for Hsf: 25 pix of staining in 8 body parts.
Homophila reports that CG5748 is a close match (2e-48) to human gene CTM;HSF4 (NP_001035757), a gene associated with Cataract, lamellar, 116800 (3);Cataract, Marner type, 116800 (3).
BioGrid reports that CG5748 interacts with CG7957 .
TRiP has 2 RNAi stocks for FBgn0001222 available for purchase.
VDRC has 5 RNAi stocks for FBgn0001222 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	468 ± 12	4 of 4	1.30	Up
Head	274 ± 17	4 of 4	0.80	Down
Eye	227 ± 13	4 of 4	0.63	Down
Thoracicoabdominal ganglion	384 ± 3	4 of 4	1.10	None
Salivary gland	289 ± 19	4 of 4	0.80	Down
Crop	331 ± 13	4 of 4	0.90	None
Midgut	184 ± 9	4 of 4	0.50	Down
Tubule	243 ± 10	4 of 4	0.70	Down
Hindgut	280 ± 2	4 of 4	0.80	Down
Heart	202 ± 6	4 of 4	0.56	Down
Fat body	464 ± 54	4 of 4	1.28	Up
Ovary	719 ± 4	4 of 4	2.00	Up
Testis	162 ± 2	4 of 4	0.40	Down
Male accessory glands	290 ± 25	4 of 4	0.80	None
Virgin spermatheca	356 ± 25	4 of 4	0.99	None
Mated spermatheca	280 ± 21	4 of 4	0.78	Down
Adult carcass	222 ± 13	4 of 4	0.60	Down
Larval CNS	356 ± 13	4 of 4	0.99	None
Larval Salivary gland	328 ± 8	4 of 4	0.91	None
Larval midgut	202 ± 5	4 of 4	0.56	Down
Larval tubule	203 ± 5	4 of 4	0.60	Down
Larval hindgut	240 ± 19	4 of 4	0.67	Down
Larval fat body	205 ± 2	4 of 4	0.60	Down
Larval trachea	193 ± 18	4 of 4	0.54	Down
Larval carcass	225 ± 19	4 of 4	0.62	Down
S2 cells (growing)	347 ± 4	4 of 4	0.96	None
Whole fly	361 ± 17	4 of 4

Looking for CG5748-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720