FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG5751-RA through 18771 annotations produced 1 hits

Transient receptor potential A1 (TrpA1):

Annotation Number : CG5751
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035934
Gbrowse : chr3L:8887787-8894742 (-) // 100.0 //
Probeset : 1639767_at
Accessions : protein= NP_001097554; /// NP_648263;, nucleotide= NM_001104084; /// NM_140006;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred by curator //
Interpro : 0005216 // ion channel activity // inferred from electronic annotation /// 0005261 // cation channel activity // inferre
FlyMine data for FBgn0035934.
Homophila reports that CG5751 is a close match (7e-11) to human gene AGS2;NOTCH2 (NP_077719), a gene associated with Alagille syndrome 2, 610205 (3).
TRiP has 3 RNAi stocks for FBgn0035934 available for purchase.
VDRC has 2 RNAi stocks for FBgn0035934 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	10 ± 2	0 of 4	2.20	None
Head	5 ± 2	0 of 4	1.30	None
Eye	2 ± 0	0 of 4	0.61	None
Thoracicoabdominal ganglion	8 ± 2	0 of 4	1.90	None
Salivary gland	2 ± 1	0 of 4	0.52	None
Crop	1 ± 0	0 of 4	0.40	None
Midgut	5 ± 2	0 of 4	1.20	None
Tubule	3 ± 1	0 of 4	0.80	None
Hindgut	57 ± 4	4 of 4	12.40	Up
Heart	3 ± 0	0 of 4	0.69	None
Fat body	3 ± 3	0 of 4	0.78	None
Ovary	1 ± 0	0 of 4	0.30	None
Testis	2 ± 0	0 of 4	0.50	None
Male accessory glands	7 ± 1	0 of 4	1.60	None
Virgin spermatheca	3 ± 1	0 of 4	0.66	None
Mated spermatheca	1 ± 0	0 of 4	0.38	None
Adult carcass	4 ± 2	0 of 4	0.90	None
Larval CNS	7 ± 1	1 of 4	1.69	None
Larval Salivary gland	3 ± 1	0 of 4	0.64	None
Larval midgut	2 ± 0	0 of 4	0.59	None
Larval tubule	4 ± 1	0 of 4	0.90	None
Larval hindgut	4 ± 2	1 of 4	1.04	None
Larval fat body	1 ± 0	0 of 4	0.40	None
Larval trachea	4 ± 2	1 of 4	0.95	None
Larval carcass	7 ± 2	0 of 4	1.56	None
S2 cells (growing)	0 ± 0	0 of 4	0.16	None
Whole fly	4 ± 1	0 of 4

Looking for CG5751-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720