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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5753-RA through 18771 annotations produced 1 hits



March 2006 (FlyBase/BDGP 5.3) (chr2R:14005400-14013337 (-) // 100.0 //):

Annotation Number : CG5753
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : chr2-83.5
Gbrowse :
Probeset : 1633016_a_at
Accessions : protein= , nucleotide=
Interpro : "0006403 // RNA localization // inferred from mutant phenotype /// 0007017 // microtubule-based process // inferred from
FlyMine data for chr2-83.5.
BioGrid reports that CG5753 interacts with CG5637 CG10718 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain490 134 of 4 5.10Up
Head218 154 of 4 2.20Up
Eye517 414 of 4 5.33Up
Thoracicoabdominal ganglion460 104 of 4 4.70Up
Salivary gland138 74 of 4 1.43Up
Crop131 54 of 4 1.40Up
Midgut64 24 of 4 0.70Down
Tubule56 44 of 4 0.60Down
Hindgut167 74 of 4 1.70Up
Heart90 34 of 4 0.93None
Fat body27 74 of 4 0.29Down
Ovary237 104 of 4 2.40Up
Testis29 34 of 4 0.30Down
Male accessory glands79 24 of 4 0.80Down
Virgin spermatheca25 14 of 4 0.27Down
Mated spermatheca42 24 of 4 0.43Down
Adult carcass132 344 of 4 1.40None
Larval CNS409 544 of 4 4.22Up
Larval Salivary gland144 124 of 4 1.49Up
Larval midgut82 54 of 4 0.85None
Larval tubule86 34 of 4 0.90None
Larval hindgut228 144 of 4 2.36Up
Larval fat body36 34 of 4 0.40Down
Larval trachea109 94 of 4 1.12None
Larval carcass142 114 of 4 1.47Up
S2 cells (growing)312 114 of 4 3.22Up
Whole fly97 44 of 4

Looking for CG5753-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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