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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG5755-RA through 18771 annotations produced 1 hits


(CG5755):

Annotation Number : CG5755
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032664
Gbrowse : chr2L:18096567-18098066 (+) // 100.0 //
Probeset : 1641138_at
Accessions : protein= NP_609864;, nucleotide= NM_136020;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0005488 // binding // inferred from electronic annotation
FlyMine data for FBgn0032664.
VDRC has 2 RNAi stocks for FBgn0032664 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.00Down
Head5 ± 10 of 4 0.10Down
Eye3 ± 10 of 4 0.05Down
Thoracicoabdominal ganglion2 ± 00 of 4 0.00Down
Salivary gland12 ± 40 of 4 0.17Down
Crop6 ± 01 of 4 0.10Down
Midgut4 ± 10 of 4 0.10Down
Tubule4 ± 00 of 4 0.10Down
Hindgut5 ± 21 of 4 0.10Down
Heart3 ± 11 of 4 0.05Down
Fat body5 ± 32 of 4 0.08Down
Ovary3 ± 00 of 4 0.00Down
Testis1070 ± 184 of 414.00Up
Male accessory glands7 ± 10 of 4 0.10Down
Virgin spermatheca7 ± 11 of 4 0.10Down
Mated spermatheca4 ± 02 of 4 0.06Down
Adult carcass11 ± 33 of 4 0.10Down
Larval CNS2 ± 10 of 4 0.04Down
Larval Salivary gland3 ± 00 of 4 0.04Down
Larval midgut2 ± 10 of 4 0.03Down
Larval tubule2 ± 00 of 4 0.00Down
Larval hindgut2 ± 01 of 4 0.04Down
Larval fat body154 ± 884 of 4 2.00None
Larval trachea7 ± 62 of 4 0.09Down
Larval carcass2 ± 00 of 4 0.04Down
S2 cells (growing)4 ± 00 of 4 0.06Down
Whole fly76 ± 34 of 4

Looking for CG5755-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime