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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5757-RA through 18771 annotations produced 1 hits



(CG5757):

Annotation Number : CG5757
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034299
Gbrowse : chr2R:13981232-13982212 (-) // 100.0 //
Probeset : 1640118_at
Accessions : protein= NP_611290;, nucleotide= NM_137446;
Interpro : 0004798 // thymidylate kinase activity // inferred from sequence or structural similarity /// 0004798 // thymidylate kin
FlyMine data for FBgn0034299.
BDGP gene expression has embryonic in situ data for CG5757: 8 pix of staining in 1 body parts.
BioGrid reports that CG5757 interacts with CG6985 .
TRiP has 1 RNAi stocks for FBgn0034299 available for purchase.
VDRC has 3 RNAi stocks for FBgn0034299 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain42 ± 14 of 4 0.20Down
Head50 ± 44 of 4 0.30Down
Eye50 ± 44 of 4 0.26Down
Thoracicoabdominal ganglion47 ± 34 of 4 0.20Down
Salivary gland86 ± 54 of 4 0.43Down
Crop66 ± 44 of 4 0.30Down
Midgut98 ± 74 of 4 0.50Down
Tubule71 ± 54 of 4 0.40Down
Hindgut57 ± 24 of 4 0.30Down
Heart44 ± 34 of 4 0.22Down
Fat body59 ± 54 of 4 0.30Down
Ovary468 ± 24 of 4 2.30Up
Testis58 ± 04 of 4 0.30Down
Male accessory glands39 ± 84 of 4 0.20Down
Virgin spermatheca61 ± 14 of 4 0.31Down
Mated spermatheca76 ± 54 of 4 0.38Down
Adult carcass60 ± 64 of 4 0.30Down
Larval CNS234 ± 184 of 4 1.18Up
Larval Salivary gland161 ± 144 of 4 0.81None
Larval midgut49 ± 54 of 4 0.25Down
Larval tubule64 ± 34 of 4 0.30Down
Larval hindgut77 ± 54 of 4 0.39Down
Larval fat body44 ± 34 of 4 0.20Down
Larval trachea218 ± 194 of 4 1.10None
Larval carcass87 ± 54 of 4 0.44Down
S2 cells (growing)229 ± 34 of 4 1.15Up
Whole fly199 ± 74 of 4

Looking for CG5757-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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