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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5762-RA through 18771 annotations produced 1 hits



/// /// CG5762 (CG5762 /// DmauCG5762 /// DsimGD18296):

Annotation Number : CG5762
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039190
Gbrowse : chr3R:20186426-20187411 (-) // 100.0 //
Probeset : 1638107_at
Accessions : protein= NP_651252;, nucleotide= NM_142995;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0039190.
BDGP gene expression has embryonic in situ data for CG5762: 11 pix of staining in 2 body parts.
BioGrid reports that CG5762 interacts with CG6889 CG8291 CG9424 .
VDRC has 3 RNAi stocks for FBgn0039190 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 10 of 4 0.00Down
Head3 ± 10 of 4 0.00Down
Eye1 ± 00 of 4 0.00Down
Thoracicoabdominal ganglion8 ± 11 of 4 0.00Down
Salivary gland4 ± 10 of 4 0.01Down
Crop5 ± 10 of 4 0.00Down
Midgut6 ± 20 of 4 0.00Down
Tubule4 ± 00 of 4 0.00Down
Hindgut149 ± 74 of 4 0.30Down
Heart0 ± 00 of 4 0.00Down
Fat body7 ± 30 of 4 0.02Down
Ovary2 ± 00 of 4 0.00Down
Testis3028 ± 944 of 4 6.90Up
Male accessory glands6 ± 20 of 4 0.00Down
Virgin spermatheca4 ± 10 of 4 0.01Down
Mated spermatheca7 ± 31 of 4 0.02Down
Adult carcass14 ± 40 of 4 0.00Down
Larval CNS5 ± 10 of 4 0.01Down
Larval Salivary gland2 ± 10 of 4 0.00Down
Larval midgut7 ± 20 of 4 0.02Down
Larval tubule8 ± 10 of 4 0.00Down
Larval hindgut2 ± 00 of 4 0.01Down
Larval fat body457 ± 2504 of 4 1.00None
Larval trachea12 ± 181 of 4 0.03Down
Larval carcass5 ± 10 of 4 0.01Down
S2 cells (growing)5 ± 00 of 4 0.01Down
Whole fly436 ± 154 of 4

Looking for CG5762-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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