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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5768-RA through 18771 annotations produced 3 hits



(CG5768):

Annotation Number : CG5768
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039198
Gbrowse : chr3R:20211824-20216089 (-) // 100.0 //
Probeset : 1633118_at
Accessions : protein= NP_651260; /// NP_732997;, nucleotide= NM_143003; /// NM_170144;
FlyMine data for FBgn0039198.
BioGrid reports that CG5768 interacts with CG6363 .
VDRC has 2 RNAi stocks for FBgn0039198 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain8 ± 10 of 4 3.40Up
Head3 ± 20 of 4 1.50None
Eye4 ± 00 of 4 1.62None
Thoracicoabdominal ganglion6 ± 20 of 4 2.60None
Salivary gland15 ± 60 of 4 5.88None
Crop4 ± 20 of 4 1.60None
Midgut7 ± 30 of 4 2.70None
Tubule3 ± 00 of 4 1.30None
Hindgut4 ± 10 of 4 1.80None
Heart2 ± 10 of 4 1.16None
Fat body9 ± 10 of 4 3.66Up
Ovary2 ± 10 of 4 0.90None
Testis8 ± 30 of 4 3.40None
Male accessory glands7 ± 40 of 4 2.80None
Virgin spermatheca4 ± 00 of 4 1.60None
Mated spermatheca4 ± 10 of 4 1.82None
Adult carcass7 ± 40 of 4 3.00None
Larval CNS7 ± 10 of 4 2.92Up
Larval Salivary gland12 ± 20 of 4 4.76Up
Larval midgut3 ± 10 of 4 1.38None
Larval tubule2 ± 00 of 4 0.80None
Larval hindgut5 ± 10 of 4 1.93None
Larval fat body5 ± 20 of 4 2.00None
Larval trachea4 ± 30 of 4 1.93None
Larval carcass3 ± 10 of 4 1.28None
S2 cells (growing)3 ± 10 of 4 1.20None
Whole fly2 ± 10 of 4



(CG5768):

Annotation Number : CG5768
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039198
Gbrowse : chr3R:20215473-20216057 (-) // 100.0 //
Probeset : 1635308_a_at
Accessions : protein= NP_651260; /// NP_732997;, nucleotide= NM_143003; /// NM_170144;
FlyMine data for FBgn0039198.
BioGrid reports that CG5768 interacts with CG6363 .
VDRC has 2 RNAi stocks for FBgn0039198 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.70None
Head0 ± 00 of 4 0.90None
Eye1 ± 00 of 4 2.15None
Thoracicoabdominal ganglion1 ± 00 of 4 2.00None
Salivary gland1 ± 00 of 4 2.69None
Crop1 ± 10 of 4 2.40None
Midgut1 ± 00 of 4 1.80None
Tubule1 ± 00 of 4 2.00None
Hindgut0 ± 00 of 4 0.90None
Heart1 ± 00 of 4 2.19None
Fat body1 ± 00 of 4 1.73None
Ovary0 ± 00 of 4 1.00None
Testis1 ± 00 of 4 2.30None
Male accessory glands0 ± 00 of 4 1.00None
Virgin spermatheca2 ± 10 of 4 3.54None
Mated spermatheca4 ± 20 of 4 6.77None
Adult carcass2 ± 00 of 4 3.20None
Larval CNS0 ± 00 of 4 0.62None
Larval Salivary gland0 ± 00 of 4 1.00None
Larval midgut3 ± 10 of 4 5.58None
Larval tubule1 ± 00 of 4 1.90None
Larval hindgut0 ± 00 of 4 1.04None
Larval fat body1 ± 00 of 4 2.30None
Larval trachea1 ± 20 of 4 2.81None
Larval carcass1 ± 00 of 4 2.00None
S2 cells (growing)0 ± 00 of 4 0.73None
Whole fly0 ± 00 of 4



(CG5768):

Annotation Number : CG5768
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039198
Gbrowse : chr3R:20215473-20216057 (-) // 100.0 //
Probeset : 1641585_at
Accessions : protein= NP_651260; /// NP_732997;, nucleotide= NM_143003; /// NM_170144;
FlyMine data for FBgn0039198.
BioGrid reports that CG5768 interacts with CG6363 .
VDRC has 2 RNAi stocks for FBgn0039198 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 1.20None
Head1 ± 10 of 4 1.10None
Eye0 ± 00 of 4 0.37None
Thoracicoabdominal ganglion0 ± 00 of 4 0.50None
Salivary gland6 ± 20 of 4 3.92None
Crop3 ± 11 of 4 2.40None
Midgut1 ± 00 of 4 1.00None
Tubule1 ± 00 of 4 1.20None
Hindgut3 ± 00 of 4 2.20None
Heart2 ± 10 of 4 1.42None
Fat body5 ± 20 of 4 3.29None
Ovary0 ± 00 of 4 0.30None
Testis4 ± 11 of 4 2.70None
Male accessory glands1 ± 00 of 4 1.10None
Virgin spermatheca4 ± 10 of 4 2.58None
Mated spermatheca8 ± 20 of 4 5.15None
Adult carcass2 ± 10 of 4 1.70None
Larval CNS2 ± 10 of 4 1.78None
Larval Salivary gland1 ± 00 of 4 0.77None
Larval midgut2 ± 10 of 4 1.48None
Larval tubule4 ± 10 of 4 2.90None
Larval hindgut1 ± 00 of 4 0.58None
Larval fat body3 ± 10 of 4 2.10None
Larval trachea2 ± 20 of 4 1.69None
Larval carcass1 ± 00 of 4 0.78None
S2 cells (growing)2 ± 00 of 4 1.32None
Whole fly1 ± 10 of 4

Looking for CG5768-RA. 3 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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