Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
About & FAQ
Top 50
Original data
Interesting meta-analysis

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG5772-RA through 18771 annotations produced 1 hits

sulfonyl urea receptor (Sur):

Annotation Number : CG5772
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028675
Gbrowse : chr2L:10182556-10198641 (-) // 100.0 //
Probeset : 1632337_at
Accessions : protein= NP_477472;, nucleotide= NM_058124;
Pathway : 0008282 // ATP-sensitive potassium channel complex // inferred from sequence or structural similarity /// 0016021 // int
Interpro : "0000166 // nucleotide binding // inferred from electronic annotation /// 0004872 // receptor activity // inferred from
FlyMine data for FBgn0028675.
BDGP gene expression has embryonic in situ data for Sur: 16 pix of staining in 3 body parts.
Homophila reports that CG5772 is a close match (7e-14) to human gene ABCB3;PSF2;RING11;TAP2 (NP_061313), a gene associated with Bare lymphocyte syndrome, type I, due to TAP2 deficiency, 604571 (3);Wegener-like granulomatosis (3).
BioGrid reports that CG5772 interacts with CG17077 .
TRiP has 1 RNAi stocks for FBgn0028675 available for purchase.
VDRC has 2 RNAi stocks for FBgn0028675 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain24 34 of 4 1.80None
Head14 24 of 4 1.10None
Eye12 14 of 4 0.88None
Thoracicoabdominal ganglion29 34 of 4 2.10Up
Salivary gland13 30 of 4 0.99None
Crop213 94 of 415.60Up
Midgut41 24 of 4 3.00Up
Tubule28 24 of 4 2.10Up
Hindgut80 44 of 4 5.80Up
Heart52 54 of 4 3.82Up
Fat body6 11 of 4 0.44Down
Ovary15 44 of 4 1.20None
Testis11 14 of 4 0.80None
Male accessory glands43 34 of 4 3.20Up
Virgin spermatheca3 10 of 4 0.27Down
Mated spermatheca9 21 of 4 0.66None
Adult carcass22 53 of 4 1.60None
Larval CNS15 24 of 4 1.12None
Larval Salivary gland4 10 of 4 0.32Down
Larval midgut23 24 of 4 1.72Up
Larval tubule23 34 of 4 1.70None
Larval hindgut47 34 of 4 3.43Up
Larval fat body8 00 of 4 0.60None
Larval trachea5 13 of 4 0.43Down
Larval carcass51 44 of 4 3.76Up
S2 cells (growing)20 04 of 4 1.52Up
Whole fly13 24 of 4

Looking for CG5772-RA. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime