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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5778-RA through 18771 annotations produced 1 hits



(CG5778):

Annotation Number : CG5778
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038930
Gbrowse : chr3R:17911092-17912119 (-) // 100.0 //
Probeset : 1638238_at
Accessions : protein= NP_001097867; /// NP_651008;, nucleotide= NM_001104397; /// NM_142751;
FlyMine data for FBgn0038930.
VDRC has 3 RNAi stocks for FBgn0038930 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain46 ± 34 of 4 0.10Down
Head1619 ± 814 of 4 3.60Up
Eye2963 ± 2204 of 4 6.62Up
Thoracicoabdominal ganglion38 ± 64 of 4 0.10Down
Salivary gland22 ± 63 of 4 0.05Down
Crop30 ± 04 of 4 0.10Down
Midgut5 ± 10 of 4 0.00Down
Tubule43 ± 113 of 4 0.10Down
Hindgut127 ± 94 of 4 0.30Down
Heart2967 ± 2524 of 4 6.63Up
Fat body2661 ± 524 of 4 5.95Up
Ovary3 ± 00 of 4 0.00Down
Testis7 ± 03 of 4 0.00Down
Male accessory glands9 ± 20 of 4 0.00Down
Virgin spermatheca1817 ± 1674 of 4 4.06Up
Mated spermatheca1924 ± 3674 of 4 4.30Up
Adult carcass1671 ± 2894 of 4 3.70Up
Larval CNS3 ± 20 of 4 0.01Down
Larval Salivary gland10 ± 11 of 4 0.02Down
Larval midgut11 ± 31 of 4 0.02Down
Larval tubule8 ± 10 of 4 0.00Down
Larval hindgut10 ± 14 of 4 0.02Down
Larval fat body8 ± 21 of 4 0.00Down
Larval trachea41 ± 671 of 4 0.09Down
Larval carcass48 ± 24 of 4 0.11Down
S2 cells (growing)2 ± 00 of 4 0.00Down
Whole fly447 ± 384 of 4

Looking for CG5778-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime