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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5783-RA through 18771 annotations produced 1 hits



(CG5783):

Annotation Number : CG5783
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032670
Gbrowse : chr2L:18156042-18157162 (+) // 100.0 //
Probeset : 1623201_at
Accessions : protein= NP_609869;, nucleotide= NM_136025;
Interpro : 0008080 // N-acetyltransferase activity // inferred from electronic annotation /// 0008415 // acyltransferase activity /
FlyMine data for FBgn0032670.
BioGrid reports that CG5783 interacts with CG8997 CG7281 CG11138 CG3629 CG10855 CG7948 CG15218 CG14939 CG12432 CG33553 CG31629 CG30425 CG31196 .
VDRC has 2 RNAi stocks for FBgn0032670 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain12 14 of 4 0.40Down
Head82 44 of 4 2.60Up
Eye76 44 of 4 2.43Up
Thoracicoabdominal ganglion14 13 of 4 0.50Down
Salivary gland35 52 of 4 1.13None
Crop146 64 of 4 4.70Up
Midgut23 14 of 4 0.70Down
Tubule246 184 of 4 7.80Up
Hindgut64 34 of 4 2.00Up
Heart62 14 of 4 2.00Up
Fat body57 14 of 4 1.81Up
Ovary7 13 of 4 0.20Down
Testis17 24 of 4 0.50Down
Male accessory glands70 14 of 4 2.20Up
Virgin spermatheca62 14 of 4 1.97Up
Mated spermatheca61 34 of 4 1.94Up
Adult carcass72 34 of 4 2.30Up
Larval CNS19 44 of 4 0.63Down
Larval Salivary gland14 30 of 4 0.46Down
Larval midgut24 24 of 4 0.77Down
Larval tubule219 114 of 4 7.00Up
Larval hindgut19 04 of 4 0.61Down
Larval fat body25 14 of 4 0.80Down
Larval trachea21 24 of 4 0.69Down
Larval carcass82 64 of 4 2.62Up
S2 cells (growing)93 54 of 4 2.98Up
Whole fly31 14 of 4

Looking for CG5783-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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