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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5784-RB through 18771 annotations produced 1 hits



Mapmodulin (Mapmodulin):

Annotation Number : CG5784
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034282
Gbrowse : chr2R:13754523-13759515 (-) // 100.0 //
Probeset : 1636363_s_at
Accessions : protein= NP_001097361; /// NP_001163184; /// NP_523780; /// NP_725732;, nucleotide= NM_001103891; /// NM_001169713; /// NM_079056; /// NM_166258;
Pathway : 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic
Interpro : 0005515 // protein binding // inferred from electronic annotation /// 0008017 // microtubule binding // inferred from se
FlyMine data for FBgn0034282.
TRiP has 1 RNAi stocks for FBgn0034282 available for purchase.
VDRC has 3 RNAi stocks for FBgn0034282 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain438 ± 124 of 4 1.50Up
Head197 ± 244 of 4 0.70Down
Eye557 ± 704 of 4 1.88Up
Thoracicoabdominal ganglion359 ± 404 of 4 1.20None
Salivary gland72 ± 64 of 4 0.24Down
Crop158 ± 64 of 4 0.50Down
Midgut84 ± 64 of 4 0.30Down
Tubule126 ± 114 of 4 0.40Down
Hindgut122 ± 24 of 4 0.40Down
Heart336 ± 134 of 4 1.13None
Fat body153 ± 214 of 4 0.52Down
Ovary591 ± 224 of 4 2.00Up
Testis236 ± 94 of 4 0.80Down
Male accessory glands162 ± 64 of 4 0.50Down
Virgin spermatheca140 ± 84 of 4 0.47Down
Mated spermatheca185 ± 54 of 4 0.62Down
Adult carcass113 ± 84 of 4 0.40Down
Larval CNS525 ± 254 of 4 1.77Up
Larval Salivary gland166 ± 94 of 4 0.56Down
Larval midgut52 ± 34 of 4 0.18Down
Larval tubule205 ± 84 of 4 0.70Down
Larval hindgut106 ± 74 of 4 0.36Down
Larval fat body259 ± 114 of 4 0.90None
Larval trachea567 ± 554 of 4 1.92Up
Larval carcass111 ± 44 of 4 0.38Down
S2 cells (growing)318 ± 74 of 4 1.08None
Whole fly296 ± 164 of 4

Looking for CG5784-RB. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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