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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5786-RA through 18771 annotations produced 1 hits



Peter Pan (ppan):

Annotation Number : CG5786
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0010770
Gbrowse : chr3R:16941974-16943622 (+) // 100.0 //
Probeset : 1628216_at
Accessions : protein= NP_476979;, nucleotide= NM_057631;
FlyMine data for FBgn0010770.
VDRC has 2 RNAi stocks for FBgn0010770 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain66 ± 34 of 4 0.40Down
Head59 ± 04 of 4 0.40Down
Eye55 ± 24 of 4 0.37Down
Thoracicoabdominal ganglion84 ± 44 of 4 0.60Down
Salivary gland55 ± 14 of 4 0.37Down
Crop81 ± 34 of 4 0.50Down
Midgut56 ± 54 of 4 0.40Down
Tubule73 ± 104 of 4 0.50Down
Hindgut55 ± 34 of 4 0.40Down
Heart69 ± 54 of 4 0.46Down
Fat body86 ± 94 of 4 0.57Down
Ovary334 ± 94 of 4 2.20Up
Testis29 ± 14 of 4 0.20Down
Male accessory glands141 ± 54 of 4 0.90None
Virgin spermatheca89 ± 74 of 4 0.59Down
Mated spermatheca126 ± 64 of 4 0.83Down
Adult carcass63 ± 24 of 4 0.40Down
Larval CNS179 ± 64 of 4 1.18Up
Larval Salivary gland89 ± 44 of 4 0.59Down
Larval midgut54 ± 74 of 4 0.36Down
Larval tubule29 ± 14 of 4 0.20Down
Larval hindgut73 ± 74 of 4 0.49Down
Larval fat body30 ± 34 of 4 0.20Down
Larval trachea180 ± 324 of 4 1.19None
Larval carcass100 ± 174 of 4 0.66None
S2 cells (growing)166 ± 44 of 4 1.10Up
Whole fly151 ± 34 of 4

Looking for CG5786-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime