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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5788-RA through 18771 annotations produced 1 hits



Ubiquitin conjugating enzyme 10 (UbcD10):

Annotation Number : CG5788
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0026316
Gbrowse : chr2R:13675911-13676914 (-) // 100.0 //
Probeset : 1634533_at
Accessions : protein= NP_477414;, nucleotide= NM_058066;
Interpro : 0004842 // ubiquitin-protein ligase activity // inferred from sequence or structural similarity /// 0004842 // ubiquitin
FlyMine data for FBgn0026316.
Homophila reports that CG5788 is a close match (7e-15) to human gene RAD6A;UBE2A (NP_003327), a gene associated with Mental retardation, X-linked syndromic (3).
VDRC has 4 RNAi stocks for FBgn0026316 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain468 ± 74 of 4 1.60Up
Head358 ± 154 of 4 1.20Up
Eye479 ± 254 of 4 1.61Up
Thoracicoabdominal ganglion310 ± 114 of 4 1.00None
Salivary gland477 ± 394 of 4 1.60Up
Crop272 ± 54 of 4 0.90None
Midgut302 ± 64 of 4 1.00None
Tubule273 ± 44 of 4 0.90Down
Hindgut326 ± 144 of 4 1.10None
Heart235 ± 54 of 4 0.79Down
Fat body225 ± 84 of 4 0.75Down
Ovary385 ± 24 of 4 1.30Up
Testis269 ± 34 of 4 0.90None
Male accessory glands267 ± 254 of 4 0.90None
Virgin spermatheca129 ± 24 of 4 0.43Down
Mated spermatheca108 ± 74 of 4 0.36Down
Adult carcass250 ± 204 of 4 0.80None
Larval CNS374 ± 204 of 4 1.25Up
Larval Salivary gland401 ± 174 of 4 1.34Up
Larval midgut324 ± 94 of 4 1.08None
Larval tubule374 ± 54 of 4 1.30Up
Larval hindgut407 ± 184 of 4 1.36Up
Larval fat body246 ± 104 of 4 0.80Down
Larval trachea376 ± 134 of 4 1.26Up
Larval carcass451 ± 224 of 4 1.51Up
S2 cells (growing)393 ± 64 of 4 1.32Up
Whole fly299 ± 164 of 4

Looking for CG5788-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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