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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5792-RA through 18771 annotations produced 1 hits



(CG5792):

Annotation Number : CG5792
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032455
Gbrowse : chr2L:12713274-12721838 (-) // 100.0 //
Probeset : 1625680_a_at
Accessions : protein= NP_609590; /// NP_723771;, nucleotide= NM_135746; /// NM_165019;
Pathway : 0005875 // microtubule associated complex // inferred from direct assay
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0032455.
BDGP gene expression has embryonic in situ data for CG5792: 12 pix of staining in 1 body parts.
BioGrid reports that CG5792 interacts with CG6040 CG7347 CG7404 CG7715 CG7726 CG7946 CG8598 CG8745 CG9463 CG9576 CG9665 CG5829 .
VDRC has 2 RNAi stocks for FBgn0032455 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain297 84 of 4 1.00None
Head215 124 of 4 0.70Down
Eye212 84 of 4 0.69Down
Thoracicoabdominal ganglion333 154 of 4 1.10None
Salivary gland393 134 of 4 1.27Up
Crop210 104 of 4 0.70Down
Midgut110 24 of 4 0.40Down
Tubule180 74 of 4 0.60Down
Hindgut261 64 of 4 0.80None
Heart323 124 of 4 1.05None
Fat body259 374 of 4 0.84None
Ovary524 154 of 4 1.70Up
Testis353 44 of 4 1.10None
Male accessory glands249 154 of 4 0.80None
Virgin spermatheca510 174 of 4 1.65Up
Mated spermatheca436 114 of 4 1.41Up
Adult carcass215 94 of 4 0.70Down
Larval CNS288 234 of 4 0.93None
Larval Salivary gland248 74 of 4 0.80None
Larval midgut103 44 of 4 0.33Down
Larval tubule320 64 of 4 1.00None
Larval hindgut238 54 of 4 0.77None
Larval fat body424 324 of 4 1.40Up
Larval trachea378 234 of 4 1.22None
Larval carcass141 124 of 4 0.46Down
S2 cells (growing)71 24 of 4 0.23Down
Whole fly309 234 of 4

Looking for CG5792-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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