FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG5796-RA through 18771 annotations produced 1 hits

protoporphyrinogen-oxidase (Ppox):

Annotation Number : CG5796
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0020018
Gbrowse : chr3R:20485771-20487573 (-) // 100.0 //
Probeset : 1635344_at
Accessions : protein= NP_651278;, nucleotide= NM_143021;
Pathway : 0005743 // mitochondrial inner membrane // inferred from sequence or structural similarity
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004729 // oxygen-dependent protoporphyrinogen
FlyMine data for FBgn0020018.
BDGP gene expression has embryonic in situ data for protoporphyrinogen-oxidase: 4 pix of staining in 1 body parts.
Homophila reports that CG5796 is a close match (9e-74) to human gene PPOX (NP_000300), a gene associated with Porphyria variegata, 176200 (3).
VDRC has 2 RNAi stocks for FBgn0020018 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	32 ± 1	4 of 4	0.30	Down
Head	52 ± 4	4 of 4	0.50	Down
Eye	91 ± 6	4 of 4	0.91	None
Thoracicoabdominal ganglion	45 ± 2	4 of 4	0.50	Down
Salivary gland	95 ± 4	4 of 4	0.94	None
Crop	99 ± 3	4 of 4	1.00	None
Midgut	90 ± 3	4 of 4	0.90	None
Tubule	94 ± 4	4 of 4	0.90	None
Hindgut	92 ± 6	4 of 4	0.90	None
Heart	106 ± 9	4 of 4	1.05	None
Fat body	80 ± 7	4 of 4	0.80	None
Ovary	136 ± 2	4 of 4	1.40	Up
Testis	366 ± 9	4 of 4	3.60	Up
Male accessory glands	165 ± 15	4 of 4	1.60	Up
Virgin spermatheca	105 ± 1	4 of 4	1.04	None
Mated spermatheca	97 ± 1	4 of 4	0.96	None
Adult carcass	91 ± 5	4 of 4	0.90	None
Larval CNS	68 ± 6	4 of 4	0.68	Down
Larval Salivary gland	92 ± 3	4 of 4	0.91	None
Larval midgut	81 ± 2	4 of 4	0.81	None
Larval tubule	105 ± 4	4 of 4	1.00	None
Larval hindgut	106 ± 10	4 of 4	1.05	None
Larval fat body	171 ± 24	4 of 4	1.70	None
Larval trachea	142 ± 2	4 of 4	1.41	Up
Larval carcass	55 ± 3	4 of 4	0.55	Down
S2 cells (growing)	223 ± 6	4 of 4	2.22	Up
Whole fly	100 ± 9	4 of 4

Looking for CG5796-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720