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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5800-RA through 18771 annotations produced 1 hits



(CG5800):

Annotation Number : CG5800
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030855
Gbrowse : chrX:17530315-17533038 (+) // 100.0 //
Probeset : 1624138_at
Accessions : protein= NP_573230;, nucleotide= NM_133002;
Interpro : "0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred fr
FlyMine data for FBgn0030855.
BDGP gene expression has embryonic in situ data for CG5800: 13 pix of staining in 18 body parts.
VDRC has 2 RNAi stocks for FBgn0030855 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain19 ± 14 of 4 0.20Down
Head24 ± 24 of 4 0.30Down
Eye17 ± 14 of 4 0.22Down
Thoracicoabdominal ganglion18 ± 14 of 4 0.20Down
Salivary gland43 ± 64 of 4 0.55Down
Crop36 ± 34 of 4 0.50Down
Midgut21 ± 13 of 4 0.30Down
Tubule23 ± 43 of 4 0.30Down
Hindgut19 ± 34 of 4 0.30Down
Heart20 ± 14 of 4 0.26Down
Fat body40 ± 34 of 4 0.52Down
Ovary173 ± 54 of 4 2.20Up
Testis13 ± 03 of 4 0.20Down
Male accessory glands79 ± 64 of 4 1.00None
Virgin spermatheca37 ± 24 of 4 0.48Down
Mated spermatheca44 ± 54 of 4 0.57Down
Adult carcass26 ± 34 of 4 0.30Down
Larval CNS96 ± 24 of 4 1.24Up
Larval Salivary gland89 ± 74 of 4 1.15None
Larval midgut19 ± 23 of 4 0.25Down
Larval tubule17 ± 04 of 4 0.20Down
Larval hindgut48 ± 54 of 4 0.62Down
Larval fat body11 ± 33 of 4 0.10Down
Larval trachea65 ± 84 of 4 0.85None
Larval carcass61 ± 144 of 4 0.80None
S2 cells (growing)79 ± 14 of 4 1.02None
Whole fly77 ± 24 of 4

Looking for CG5800-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime