FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG5805-RA through 18771 annotations produced 1 hits

(CG5805):

Annotation Number : CG5805
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039223
Gbrowse : chr3R:20610457-20613142 (-) // 100.0 //
Probeset : 1631704_at
Accessions : protein= NP_651284;, nucleotide= NM_143027;
Pathway : 0005740 // mitochondrial envelope // inferred from sequence or structural similarity /// 0005743 // mitochondrial inner
Interpro : 0005215 // transporter activity // inferred from electronic annotation /// 0005488 // binding // inferred from electroni
FlyMine data for FBgn0039223.
BDGP gene expression has embryonic in situ data for CG5805: 25 pix of staining in 2 body parts.
Homophila reports that CG5805 is a close match (1e-13) to human gene CTLN2;SLC25A13 (NP_055066), a gene associated with Citrullinemia, adult-onset type II, 603471 (3);Citrullinemia, type II, neonatal-onset, 605814 (3).
VDRC has 3 RNAi stocks for FBgn0039223 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	169 ± 6	4 of 4	1.30	None
Head	99 ± 9	4 of 4	0.80	None
Eye	86 ± 4	4 of 4	0.66	Down
Thoracicoabdominal ganglion	121 ± 4	4 of 4	0.90	None
Salivary gland	199 ± 16	4 of 4	1.51	Up
Crop	148 ± 6	4 of 4	1.10	None
Midgut	176 ± 11	4 of 4	1.30	Up
Tubule	261 ± 3	4 of 4	2.00	Up
Hindgut	163 ± 10	4 of 4	1.20	None
Heart	188 ± 25	4 of 4	1.43	None
Fat body	172 ± 13	4 of 4	1.31	Up
Ovary	165 ± 3	4 of 4	1.30	Up
Testis	18 ± 1	4 of 4	0.10	Down
Male accessory glands	63 ± 3	4 of 4	0.50	Down
Virgin spermatheca	178 ± 30	4 of 4	1.36	None
Mated spermatheca	134 ± 5	4 of 4	1.02	None
Adult carcass	114 ± 9	4 of 4	0.90	None
Larval CNS	71 ± 9	4 of 4	0.54	Down
Larval Salivary gland	58 ± 8	4 of 4	0.44	Down
Larval midgut	166 ± 28	4 of 4	1.27	None
Larval tubule	30 ± 0	4 of 4	0.20	Down
Larval hindgut	118 ± 6	4 of 4	0.90	None
Larval fat body	40 ± 7	4 of 4	0.30	Down
Larval trachea	57 ± 7	4 of 4	0.44	Down
Larval carcass	167 ± 7	4 of 4	1.27	Up
S2 cells (growing)	246 ± 12	4 of 4	1.87	Up
Whole fly	131 ± 9	4 of 4

Looking for CG5805-RA. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720