FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG5809-RA through 18771 annotations produced 1 hits

CaBP1 (CaBP1):

Annotation Number : CG5809
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0025678
Gbrowse : chr2L:16354938-16356761 (-) // 100.0 //
Probeset : 1626196_at
Accessions : protein= NP_609792;, nucleotide= NM_135948;
Pathway : 0005811 // lipid particle // inferred from direct assay
Interpro : 0003756 // protein disulfide isomerase activity // inferred from sequence or structural similarity /// 0003756 // protei
FlyMine data for FBgn0025678.
BDGP gene expression has embryonic in situ data for CaBP1: 19 pix of staining in 11 body parts.
VDRC has 2 RNAi stocks for FBgn0025678 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	203 ± 4	4 of 4	0.50	Down
Head	244 ± 14	4 of 4	0.60	Down
Eye	135 ± 8	4 of 4	0.35	Down
Thoracicoabdominal ganglion	234 ± 4	4 of 4	0.60	Down
Salivary gland	1010 ± 91	4 of 4	2.57	Up
Crop	223 ± 8	4 of 4	0.60	Down
Midgut	571 ± 14	4 of 4	1.50	Up
Tubule	394 ± 82	4 of 4	1.00	None
Hindgut	200 ± 6	4 of 4	0.50	Down
Heart	430 ± 21	4 of 4	1.10	None
Fat body	314 ± 40	4 of 4	0.80	Down
Ovary	407 ± 4	4 of 4	1.00	None
Testis	240 ± 2	4 of 4	0.60	Down
Male accessory glands	3520 ± 83	4 of 4	9.00	Up
Virgin spermatheca	817 ± 50	4 of 4	2.08	Up
Mated spermatheca	950 ± 110	4 of 4	2.42	Up
Adult carcass	243 ± 6	4 of 4	0.60	Down
Larval CNS	564 ± 11	4 of 4	1.44	Up
Larval Salivary gland	4785 ± 139	4 of 4	12.18	Up
Larval midgut	595 ± 37	4 of 4	1.52	Up
Larval tubule	532 ± 15	4 of 4	1.40	Up
Larval hindgut	422 ± 28	4 of 4	1.08	None
Larval fat body	542 ± 108	4 of 4	1.40	None
Larval trachea	780 ± 182	4 of 4	1.99	Up
Larval carcass	540 ± 21	4 of 4	1.38	Up
S2 cells (growing)	2448 ± 39	4 of 4	6.23	Up
Whole fly	392 ± 14	4 of 4

Looking for CG5809-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720