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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5810-RA through 18771 annotations produced 1 hits



(CG5810):

Annotation Number : CG5810
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038866
Gbrowse : chr3R:16989511-16990798 (+) // 100.0 //
Probeset : 1623523_at
Accessions : protein= NP_650952;, nucleotide= NM_142695;
Interpro : 0005515 // protein binding // inferred from electronic annotation
FlyMine data for FBgn0038866.
VDRC has 3 RNAi stocks for FBgn0038866 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 10 of 4 0.70None
Head3 ± 10 of 4 0.70None
Eye1 ± 10 of 4 0.36None
Thoracicoabdominal ganglion2 ± 10 of 4 0.70None
Salivary gland9 ± 20 of 4 2.13None
Crop2 ± 00 of 4 0.60None
Midgut5 ± 10 of 4 1.10None
Tubule4 ± 00 of 4 1.00None
Hindgut1 ± 00 of 4 0.30None
Heart1 ± 00 of 4 0.24None
Fat body6 ± 23 of 4 1.43None
Ovary3 ± 01 of 4 0.70None
Testis3 ± 00 of 4 0.80None
Male accessory glands5 ± 21 of 4 1.30None
Virgin spermatheca4 ± 02 of 4 1.03None
Mated spermatheca2 ± 11 of 4 0.55None
Adult carcass6 ± 10 of 4 1.30None
Larval CNS1 ± 10 of 4 0.34None
Larval Salivary gland2 ± 10 of 4 0.66None
Larval midgut2 ± 00 of 4 0.58None
Larval tubule3 ± 11 of 4 0.70None
Larval hindgut2 ± 01 of 4 0.48None
Larval fat body2 ± 10 of 4 0.60None
Larval trachea5 ± 20 of 4 1.13None
Larval carcass89 ± 84 of 420.20Up
S2 cells (growing)9 ± 14 of 4 2.14Up
Whole fly4 ± 10 of 4

Looking for CG5810-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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