Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5814-RA through 18771 annotations produced 1 hits



chr3R:20694074-20696617 (-) // 100.0 // (Cyclin B3):

Annotation Number : CG5814
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1626454_at
Accessions : protein= , nucleotide= NP_651303;
Pathway : 0000281 // cytokinesis after mitosis // inferred from direct assay /// 0000281 // cytokinesis after mitosis // inferred
Interpro : 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation
FlyMine data for full length.
BioGrid reports that CG5814 interacts with CG8676 CG11420 CG5460 CG8114 CG8114 CG5363 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain11 14 of 4 0.00Down
Head9 12 of 4 0.00Down
Eye4 00 of 4 0.01Down
Thoracicoabdominal ganglion13 04 of 4 0.00Down
Salivary gland21 23 of 4 0.04Down
Crop12 23 of 4 0.00Down
Midgut12 23 of 4 0.00Down
Tubule12 51 of 4 0.00Down
Hindgut13 14 of 4 0.00Down
Heart2 00 of 4 0.00Down
Fat body8 31 of 4 0.01Down
Ovary1286 234 of 4 2.30Up
Testis291 114 of 4 0.50Down
Male accessory glands5 10 of 4 0.00Down
Virgin spermatheca12 13 of 4 0.02Down
Mated spermatheca12 33 of 4 0.02Down
Adult carcass30 83 of 4 0.10Down
Larval CNS441 414 of 4 0.77Down
Larval Salivary gland9 00 of 4 0.02Down
Larval midgut20 14 of 4 0.04Down
Larval tubule12 24 of 4 0.00Down
Larval hindgut20 14 of 4 0.04Down
Larval fat body57 153 of 4 0.10Down
Larval trachea40 74 of 4 0.07Down
Larval carcass35 24 of 4 0.06Down
S2 cells (growing)193 54 of 4 0.34Down
Whole fly571 374 of 4

Looking for CG5814-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime