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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5818-RA through 18771 annotations produced 1 hits



mitochondrial ribosomal protein L4 (mRpL4):

Annotation Number : CG5818
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0001995
Gbrowse : chr2L:16328058-16329128 (-) // 99.41 //
Probeset : 1639937_at
Accessions : protein= NP_524939;, nucleotide= NM_080200;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005762 // mitochondrial large ribosomal subunit //
Interpro : 0003735 // structural constituent of ribosome // inferred from sequence or structural similarity /// 0003735 // structur
FlyMine data for FBgn0001995.
VDRC has 2 RNAi stocks for FBgn0001995 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain345 34 of 4 1.30Up
Head270 84 of 4 1.00None
Eye303 44 of 4 1.13None
Thoracicoabdominal ganglion527 144 of 4 2.00Up
Salivary gland255 84 of 4 0.95None
Crop268 74 of 4 1.00None
Midgut210 34 of 4 0.80Down
Tubule497 84 of 4 1.90Up
Hindgut369 84 of 4 1.40Up
Heart316 74 of 4 1.18Up
Fat body315 214 of 4 1.17Up
Ovary456 64 of 4 1.70Up
Testis98 44 of 4 0.40Down
Male accessory glands226 124 of 4 0.80None
Virgin spermatheca419 54 of 4 1.56Up
Mated spermatheca474 154 of 4 1.77Up
Adult carcass291 234 of 4 1.10None
Larval CNS304 174 of 4 1.14None
Larval Salivary gland232 104 of 4 0.87None
Larval midgut165 124 of 4 0.62Down
Larval tubule159 54 of 4 0.60Down
Larval hindgut435 284 of 4 1.62Up
Larval fat body134 84 of 4 0.50Down
Larval trachea287 284 of 4 1.07None
Larval carcass288 284 of 4 1.07None
S2 cells (growing)237 24 of 4 0.89None
Whole fly268 134 of 4

Looking for CG5818-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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