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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5821-RA through 18771 annotations produced 1 hits



quaking related 58E-2 (qkr58E-2):

Annotation Number : CG5821
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0022985
Gbrowse : chr2R:18303317-18306209 (+) // 100.0 //
Probeset : 1625047_at
Accessions : protein= NP_523810;, nucleotide= NM_079086;
Interpro : 0003723 // RNA binding // inferred from electronic annotation /// 0003729 // mRNA binding // non-traceable author statem
FlyMine data for FBgn0022985.
VDRC has 3 RNAi stocks for FBgn0022985 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain447 ± 134 of 4 1.80Up
Head291 ± 154 of 4 1.20None
Eye417 ± 164 of 4 1.70Up
Thoracicoabdominal ganglion372 ± 144 of 4 1.50Up
Salivary gland382 ± 54 of 4 1.56Up
Crop280 ± 274 of 4 1.10None
Midgut196 ± 34 of 4 0.80Down
Tubule322 ± 94 of 4 1.30Up
Hindgut261 ± 24 of 4 1.10None
Heart277 ± 74 of 4 1.13None
Fat body218 ± 124 of 4 0.89None
Ovary582 ± 24 of 4 2.40Up
Testis44 ± 14 of 4 0.20Down
Male accessory glands861 ± 404 of 4 3.50Up
Virgin spermatheca188 ± 24 of 4 0.77Down
Mated spermatheca219 ± 64 of 4 0.90None
Adult carcass219 ± 94 of 4 0.90None
Larval CNS506 ± 194 of 4 2.06Up
Larval Salivary gland289 ± 164 of 4 1.18None
Larval midgut163 ± 44 of 4 0.67Down
Larval tubule224 ± 84 of 4 0.90None
Larval hindgut294 ± 104 of 4 1.20Up
Larval fat body151 ± 84 of 4 0.60Down
Larval trachea273 ± 404 of 4 1.11None
Larval carcass292 ± 154 of 4 1.19None
S2 cells (growing)387 ± 44 of 4 1.58Up
Whole fly245 ± 124 of 4

Looking for CG5821-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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