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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5826-RA through 18771 annotations produced 1 hits



Thioredoxin peroxidase 3 (Prx5037):

Annotation Number : CG5826
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038519
Gbrowse : chr3R:13370949-13372231 (-) // 100.0 //
Probeset : 1641195_at
Accessions : protein= NP_524387;, nucleotide= NM_079663;
Pathway : engulfment // inferred from mutant phenotype /// 0042744 // hydrogen peroxide catabolic process // inferred from direct
Interpro : 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // inferred from sequence or structu
FlyMine data for FBgn0038519.
VDRC has 2 RNAi stocks for FBgn0038519 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain337 ± 244 of 4 0.80None
Head559 ± 274 of 4 1.30Up
Eye554 ± 294 of 4 1.31Up
Thoracicoabdominal ganglion380 ± 134 of 4 0.90None
Salivary gland427 ± 244 of 4 1.01None
Crop415 ± 194 of 4 1.00None
Midgut430 ± 194 of 4 1.00None
Tubule685 ± 204 of 4 1.60Up
Hindgut596 ± 44 of 4 1.40Up
Heart930 ± 444 of 4 2.19Up
Fat body1026 ± 624 of 4 2.42Up
Ovary530 ± 64 of 4 1.30Up
Testis206 ± 94 of 4 0.50Down
Male accessory glands185 ± 84 of 4 0.40Down
Virgin spermatheca1094 ± 164 of 4 2.58Up
Mated spermatheca1030 ± 1324 of 4 2.43Up
Adult carcass718 ± 304 of 4 1.70Up
Larval CNS426 ± 214 of 4 1.01None
Larval Salivary gland322 ± 214 of 4 0.76Down
Larval midgut367 ± 204 of 4 0.87None
Larval tubule226 ± 174 of 4 0.50Down
Larval hindgut587 ± 314 of 4 1.39Up
Larval fat body270 ± 104 of 4 0.60Down
Larval trachea473 ± 294 of 4 1.12None
Larval carcass391 ± 324 of 4 0.92None
S2 cells (growing)322 ± 64 of 4 0.76Down
Whole fly423 ± 194 of 4

Looking for CG5826-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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