FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG5836-RA through 18771 annotations produced 1 hits

splicing factor 1 (SF1):

Annotation Number : CG5836
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0025571
Gbrowse : chr3R:13366144-13370873 (+) // 100.0 //
Probeset : 1631141_at
Accessions : protein= NP_524654;, nucleotide= NM_079915;
Pathway : via spliceosome // inferred by curator /// 0000398 // nuclear mRNA splicing
Interpro : via spliceosome // inferred from sequence or structural similarity /// 0000398 // nuclear mRNA splicing
FlyMine data for FBgn0025571.
BDGP gene expression has embryonic in situ data for SF1: 4 pix of staining in 1 body parts.
TRiP has 1 RNAi stocks for FBgn0025571 available for purchase.
VDRC has 2 RNAi stocks for FBgn0025571 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	374 ± 19	4 of 4	1.80	Up
Head	128 ± 4	4 of 4	0.60	Down
Eye	155 ± 4	4 of 4	0.74	Down
Thoracicoabdominal ganglion	291 ± 9	4 of 4	1.40	Up
Salivary gland	186 ± 9	4 of 4	0.89	None
Crop	121 ± 10	4 of 4	0.60	Down
Midgut	89 ± 4	4 of 4	0.40	Down
Tubule	149 ± 5	4 of 4	0.70	Down
Hindgut	122 ± 5	4 of 4	0.60	Down
Heart	117 ± 6	4 of 4	0.56	Down
Fat body	69 ± 8	4 of 4	0.33	Down
Ovary	401 ± 8	4 of 4	1.90	Up
Testis	92 ± 2	4 of 4	0.40	Down
Male accessory glands	275 ± 10	4 of 4	1.30	Up
Virgin spermatheca	118 ± 8	4 of 4	0.57	Down
Mated spermatheca	146 ± 15	4 of 4	0.70	Down
Adult carcass	90 ± 5	4 of 4	0.40	Down
Larval CNS	459 ± 32	4 of 4	2.21	Up
Larval Salivary gland	362 ± 14	4 of 4	1.74	Up
Larval midgut	99 ± 8	4 of 4	0.48	Down
Larval tubule	138 ± 13	4 of 4	0.70	Down
Larval hindgut	165 ± 10	4 of 4	0.79	Down
Larval fat body	118 ± 9	4 of 4	0.60	Down
Larval trachea	249 ± 14	4 of 4	1.20	Up
Larval carcass	206 ± 14	4 of 4	0.99	None
S2 cells (growing)	222 ± 3	4 of 4	1.07	None
Whole fly	208 ± 7	4 of 4

Looking for CG5836-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720