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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5837-RA through 18771 annotations produced 1 hits



kette (Hem):

Annotation Number : CG5837
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0011771
Gbrowse : chr3L:22277453-22281292 (-) // 100.0 //
Probeset : 1630271_at
Accessions : protein= NP_524214;, nucleotide= NM_079490;
Pathway : engulfment // inferred from mutant phenotype /// 0007010 // cytoskeleton organization // inferred from mutant phenotype
Interpro : 0005737 // cytoplasm // non-traceable author statement /// 0005886 // plasma membrane // inferred from direct assay ///
FlyMine data for FBgn0011771.
BDGP gene expression has embryonic in situ data for Hem: 4 pix of staining in 1 body parts.
BioGrid reports that CG5837 interacts with CG2248 CG3727 .
TRiP has 2 RNAi stocks for FBgn0011771 available for purchase.
VDRC has 2 RNAi stocks for FBgn0011771 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain187 ± 24 of 4 1.60Up
Head122 ± 44 of 4 1.00None
Eye116 ± 34 of 4 0.98None
Thoracicoabdominal ganglion182 ± 54 of 4 1.50Up
Salivary gland177 ± 84 of 4 1.50Up
Crop138 ± 24 of 4 1.20None
Midgut163 ± 24 of 4 1.40Up
Tubule109 ± 54 of 4 0.90None
Hindgut131 ± 54 of 4 1.10None
Heart135 ± 44 of 4 1.14None
Fat body73 ± 54 of 4 0.62Down
Ovary238 ± 64 of 4 2.00Up
Testis49 ± 24 of 4 0.40Down
Male accessory glands219 ± 144 of 4 1.90Up
Virgin spermatheca135 ± 64 of 4 1.14None
Mated spermatheca161 ± 84 of 4 1.37Up
Adult carcass73 ± 44 of 4 0.60Down
Larval CNS374 ± 164 of 4 3.17Up
Larval Salivary gland311 ± 74 of 4 2.64Up
Larval midgut208 ± 54 of 4 1.76Up
Larval tubule222 ± 84 of 4 1.90Up
Larval hindgut234 ± 34 of 4 1.98Up
Larval fat body169 ± 134 of 4 1.40Up
Larval trachea220 ± 174 of 4 1.86Up
Larval carcass159 ± 54 of 4 1.35Up
S2 cells (growing)362 ± 44 of 4 3.06Up
Whole fly118 ± 74 of 4

Looking for CG5837-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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