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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5844-RA through 18771 annotations produced 1 hits



Enoyl-CoA hydratase (CG5844):

Annotation Number : CG5844
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038049
Gbrowse : chr3R:8259823-8261365 (+) // 100.0 //
Probeset : 1637954_at
Accessions : protein= NP_650199;, nucleotide= NM_141942;
Pathway : engulfment // inferred from mutant phenotype /// 0008152 // metabolic process // inferred from electronic annotation"
FlyMine data for FBgn0038049.
BDGP gene expression has embryonic in situ data for CG5844: 4 pix of staining in 1 body parts.
Homophila reports that CG5844 is a close match (1e-12) to human gene HADHA;MTPA (NP_000173), a gene associated with Fatty liver, acute, of pregnancy, 609016 (3);HELLP syndrome, maternal, of pregnancy, 609016 (3);LCHAD deficiency, 609016 (3);Trifunctional protein deficiency, 609015 (3).
BioGrid reports that CG5844 interacts with CG7104 .
TRiP has 2 RNAi stocks for FBgn0038049 available for purchase.
VDRC has 2 RNAi stocks for FBgn0038049 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain191 ± 34 of 4 1.00None
Head121 ± 184 of 4 0.60Down
Eye185 ± 14 of 4 0.94None
Thoracicoabdominal ganglion140 ± 54 of 4 0.70None
Salivary gland124 ± 104 of 4 0.63Down
Crop104 ± 64 of 4 0.50Down
Midgut137 ± 74 of 4 0.70None
Tubule126 ± 54 of 4 0.60Down
Hindgut148 ± 104 of 4 0.80None
Heart133 ± 94 of 4 0.67None
Fat body120 ± 254 of 4 0.61Down
Ovary225 ± 114 of 4 1.10None
Testis420 ± 314 of 4 2.10Up
Male accessory glands136 ± 64 of 4 0.70None
Virgin spermatheca82 ± 34 of 4 0.42Down
Mated spermatheca85 ± 34 of 4 0.43Down
Adult carcass130 ± 114 of 4 0.70None
Larval CNS159 ± 214 of 4 0.81None
Larval Salivary gland169 ± 174 of 4 0.86None
Larval midgut103 ± 74 of 4 0.52Down
Larval tubule117 ± 54 of 4 0.60Down
Larval hindgut102 ± 44 of 4 0.52Down
Larval fat body115 ± 94 of 4 0.60Down
Larval trachea148 ± 104 of 4 0.75None
Larval carcass127 ± 124 of 4 0.64Down
S2 cells (growing)198 ± 64 of 4 1.01None
Whole fly197 ± 234 of 4

Looking for CG5844-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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