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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG5861-RA through 18771 annotations produced 1 hits


Annotation Number : CG5861
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0015338
Gbrowse : chr2L:16305785-16307275 (-) // 100.0 //
Probeset : 1641285_at
Accessions : protein= NP_609789;, nucleotide= NM_135945;
Pathway : engulfment // inferred from mutant phenotype"
FlyMine data for FBgn0015338.
BDGP gene expression has embryonic in situ data for CG5861: 4 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0015338 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain480 54 of 4 1.40Up
Head289 284 of 4 0.90None
Eye541 334 of 4 1.63Up
Thoracicoabdominal ganglion448 104 of 4 1.40Up
Salivary gland234 74 of 4 0.71Down
Crop261 84 of 4 0.80Down
Midgut314 134 of 4 0.90None
Tubule376 114 of 4 1.10Up
Hindgut325 74 of 4 1.00None
Heart301 64 of 4 0.91None
Fat body298 304 of 4 0.90None
Ovary447 44 of 4 1.30Up
Testis187 74 of 4 0.60Down
Male accessory glands90 54 of 4 0.30Down
Virgin spermatheca289 114 of 4 0.87None
Mated spermatheca264 144 of 4 0.80Down
Adult carcass245 104 of 4 0.70Down
Larval CNS422 424 of 4 1.27Up
Larval Salivary gland411 314 of 4 1.24None
Larval midgut202 14 of 4 0.61Down
Larval tubule497 74 of 4 1.50Up
Larval hindgut354 164 of 4 1.07None
Larval fat body289 174 of 4 0.90None
Larval trachea442 224 of 4 1.34Up
Larval carcass356 84 of 4 1.07None
S2 cells (growing)1126 74 of 4 3.40Up
Whole fly331 164 of 4

Looking for CG5861-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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