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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5863-RA through 18771 annotations produced 1 hits



(CG5863):

Annotation Number : CG5863
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038507
Gbrowse : chr3R:13236896-13238084 (+) // 100.0 //
Probeset : 1633038_at
Accessions : protein= NP_650623;, nucleotide= NM_142366;
Interpro : 0004190 // aspartic-type endopeptidase activity // inferred from sequence or structural similarity /// 0004190 // aspart
FlyMine data for FBgn0038507.
Homophila reports that CG5863 is a close match (1e-53) to human gene REN (NP_000528), a gene associated with Renal tubular dysgenesis, 267430 (3);[Hyperproreninemia] (3).
VDRC has 3 RNAi stocks for FBgn0038507 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 2.60None
Head4 ± 00 of 4 3.90Up
Eye6 ± 11 of 4 6.23Up
Thoracicoabdominal ganglion1 ± 00 of 4 1.30None
Salivary gland8 ± 30 of 4 7.77None
Crop4 ± 10 of 4 4.30None
Midgut6 ± 10 of 4 5.70None
Tubule2 ± 00 of 4 2.60Up
Hindgut1 ± 10 of 4 1.70None
Heart4 ± 10 of 4 3.66None
Fat body3 ± 20 of 4 3.00None
Ovary2 ± 00 of 4 2.10None
Testis7 ± 12 of 4 7.00Up
Male accessory glands6 ± 30 of 4 6.10None
Virgin spermatheca4 ± 10 of 4 3.84None
Mated spermatheca5 ± 10 of 4 4.57None
Adult carcass6 ± 10 of 4 5.80Up
Larval CNS4 ± 10 of 4 3.70Up
Larval Salivary gland5 ± 20 of 4 5.30None
Larval midgut4 ± 10 of 4 4.09None
Larval tubule2 ± 10 of 4 2.60None
Larval hindgut3 ± 11 of 4 3.57None
Larval fat body3 ± 00 of 4 2.70None
Larval trachea51 ± 314 of 447.20Up
Larval carcass5 ± 10 of 4 5.32None
S2 cells (growing)4 ± 00 of 4 4.23Up
Whole fly1 ± 00 of 4

Looking for CG5863-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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