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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5864-RA through 18771 annotations produced 1 hits



AP-1sigma (AP-1sigma):

Annotation Number : CG5864
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039132
Gbrowse : chr3R:19784375-19788277 (+) // 100.0 //
Probeset : 1625876_at
Accessions : protein= NP_651198;, nucleotide= NM_142941;
Pathway : 0008021 // synaptic vesicle // traceable author statement /// 0030117 // membrane coat // inferred from electronic annot
Interpro : 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physic
FlyMine data for FBgn0039132.
Homophila reports that CG5864 is a close match (4e-65) to human gene AP1S2;MRX59 (NP_003907), a gene associated with Mental retardation, X-linked 59, 300630 (3).
BioGrid reports that CG5864 interacts with CG9113 .
TRiP has 1 RNAi stocks for FBgn0039132 available for purchase.
VDRC has 3 RNAi stocks for FBgn0039132 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain590 154 of 4 1.20Up
Head340 204 of 4 0.70Down
Eye359 124 of 4 0.73Down
Thoracicoabdominal ganglion518 54 of 4 1.10None
Salivary gland392 104 of 4 0.80Down
Crop163 134 of 4 0.30Down
Midgut272 184 of 4 0.60Down
Tubule73 44 of 4 0.10Down
Hindgut188 44 of 4 0.40Down
Heart292 44 of 4 0.60Down
Fat body246 344 of 4 0.50Down
Ovary892 134 of 4 1.80Up
Testis101 34 of 4 0.20Down
Male accessory glands785 194 of 4 1.60Up
Virgin spermatheca361 364 of 4 0.74Down
Mated spermatheca363 214 of 4 0.74Down
Adult carcass167 114 of 4 0.30Down
Larval CNS544 334 of 4 1.11None
Larval Salivary gland855 234 of 4 1.75Up
Larval midgut314 84 of 4 0.64Down
Larval tubule113 34 of 4 0.20Down
Larval hindgut363 164 of 4 0.74Down
Larval fat body213 224 of 4 0.40Down
Larval trachea573 314 of 4 1.17Up
Larval carcass272 124 of 4 0.56Down
S2 cells (growing)660 64 of 4 1.35Up
Whole fly489 214 of 4

Looking for CG5864-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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