FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG5864-RA through 18771 annotations produced 1 hits

AP-1sigma (AP-1sigma):

Annotation Number : CG5864
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039132
Gbrowse : chr3R:19784375-19788277 (+) // 100.0 //
Probeset : 1625876_at
Accessions : protein= NP_651198;, nucleotide= NM_142941;
Pathway : 0008021 // synaptic vesicle // traceable author statement /// 0030117 // membrane coat // inferred from electronic annot
Interpro : 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physic
FlyMine data for FBgn0039132.
Homophila reports that CG5864 is a close match (4e-65) to human gene AP1S2;MRX59 (NP_003907), a gene associated with Mental retardation, X-linked 59, 300630 (3).
BioGrid reports that CG5864 interacts with CG9113 .
TRiP has 1 RNAi stocks for FBgn0039132 available for purchase.
VDRC has 3 RNAi stocks for FBgn0039132 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	590 ± 15	4 of 4	1.20	Up
Head	340 ± 20	4 of 4	0.70	Down
Eye	359 ± 12	4 of 4	0.73	Down
Thoracicoabdominal ganglion	518 ± 5	4 of 4	1.10	None
Salivary gland	392 ± 10	4 of 4	0.80	Down
Crop	163 ± 13	4 of 4	0.30	Down
Midgut	272 ± 18	4 of 4	0.60	Down
Tubule	73 ± 4	4 of 4	0.10	Down
Hindgut	188 ± 4	4 of 4	0.40	Down
Heart	292 ± 4	4 of 4	0.60	Down
Fat body	246 ± 34	4 of 4	0.50	Down
Ovary	892 ± 13	4 of 4	1.80	Up
Testis	101 ± 3	4 of 4	0.20	Down
Male accessory glands	785 ± 19	4 of 4	1.60	Up
Virgin spermatheca	361 ± 36	4 of 4	0.74	Down
Mated spermatheca	363 ± 21	4 of 4	0.74	Down
Adult carcass	167 ± 11	4 of 4	0.30	Down
Larval CNS	544 ± 33	4 of 4	1.11	None
Larval Salivary gland	855 ± 23	4 of 4	1.75	Up
Larval midgut	314 ± 8	4 of 4	0.64	Down
Larval tubule	113 ± 3	4 of 4	0.20	Down
Larval hindgut	363 ± 16	4 of 4	0.74	Down
Larval fat body	213 ± 22	4 of 4	0.40	Down
Larval trachea	573 ± 31	4 of 4	1.17	Up
Larval carcass	272 ± 12	4 of 4	0.56	Down
S2 cells (growing)	660 ± 6	4 of 4	1.35	Up
Whole fly	489 ± 21	4 of 4

Looking for CG5864-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720