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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5867-RA through 18771 annotations produced 1 hits



(CG5867):

Annotation Number : CG5867
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027586
Gbrowse : chr2L:13236492-13239292 (+) // 99.62 //
Probeset : 1632650_at
Accessions : protein= NP_609625;, nucleotide= NM_135781;
FlyMine data for FBgn0027586.
BDGP gene expression has embryonic in situ data for BcDNA:GH05536: 4 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0027586 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain75 94 of 4 0.20Down
Head2608 1114 of 4 8.30Up
Eye807 154 of 4 2.56Up
Thoracicoabdominal ganglion29 44 of 4 0.10Down
Salivary gland378 374 of 4 1.20None
Crop4835 3084 of 415.30Up
Midgut254 174 of 4 0.80Down
Tubule193 254 of 4 0.60Down
Hindgut1833 554 of 4 5.80Up
Heart289 224 of 4 0.92None
Fat body288 914 of 4 0.91None
Ovary20 24 of 4 0.10Down
Testis38 14 of 4 0.10Down
Male accessory glands127 124 of 4 0.40Down
Virgin spermatheca283 114 of 4 0.90None
Mated spermatheca287 304 of 4 0.91None
Adult carcass1462 474 of 4 4.60Up
Larval CNS115 484 of 4 0.37Down
Larval Salivary gland122 184 of 4 0.39Down
Larval midgut271 154 of 4 0.86None
Larval tubule24 23 of 4 0.10Down
Larval hindgut209 114 of 4 0.66Down
Larval fat body33 43 of 4 0.10Down
Larval trachea2154 2944 of 4 6.82Up
Larval carcass360 394 of 4 1.14None
S2 cells (growing)1 00 of 4 0.01Down
Whole fly315 164 of 4

Looking for CG5867-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime