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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5869-RA through 18771 annotations produced 1 hits



(CG5869):

Annotation Number : CG5869
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028894
Gbrowse : chr2L:16301655-16302952 (-) // 100.0 //
Probeset : 1628987_at
Accessions : protein= NP_609787;, nucleotide= NM_135943;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0003779 // actin binding // inferred from electronic annotation /// 0003779 // actin binding // inferred from sequence o
FlyMine data for FBgn0028894.
VDRC has 2 RNAi stocks for FBgn0028894 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain86 34 of 4 0.70Down
Head79 64 of 4 0.60Down
Eye57 14 of 4 0.45Down
Thoracicoabdominal ganglion82 24 of 4 0.70Down
Salivary gland120 54 of 4 0.95None
Crop71 44 of 4 0.60Down
Midgut323 134 of 4 2.50Up
Tubule75 74 of 4 0.60Down
Hindgut82 34 of 4 0.60Down
Heart166 84 of 4 1.31Up
Fat body77 74 of 4 0.61Down
Ovary245 34 of 4 1.90Up
Testis146 74 of 4 1.20None
Male accessory glands118 74 of 4 0.90None
Virgin spermatheca143 74 of 4 1.13None
Mated spermatheca181 114 of 4 1.43Up
Adult carcass58 64 of 4 0.50Down
Larval CNS421 374 of 4 3.32Up
Larval Salivary gland265 144 of 4 2.09Up
Larval midgut656 294 of 4 5.17Up
Larval tubule76 44 of 4 0.60Down
Larval hindgut199 114 of 4 1.57Up
Larval fat body194 34 of 4 1.50Up
Larval trachea141 74 of 4 1.11None
Larval carcass108 34 of 4 0.86None
S2 cells (growing)524 204 of 4 4.13Up
Whole fly127 64 of 4

Looking for CG5869-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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