Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5871-RA through 18771 annotations produced 1 hits



(CG5871):

Annotation Number : CG5871
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038870
Gbrowse : chr3R:17044800-17048568 (+) // 99.88 //
Probeset : 1624539_at
Accessions : protein= NP_650956;, nucleotide= NM_142699;
Interpro : "0004415 // hyalurononglucosaminidase activity // inferred from sequence or structural similarity /// 0004415 // hyaluro
FlyMine data for FBgn0038870.
VDRC has 3 RNAi stocks for FBgn0038870 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain79 ± 14 of 4 0.70Down
Head56 ± 24 of 4 0.50Down
Eye67 ± 14 of 4 0.63Down
Thoracicoabdominal ganglion69 ± 04 of 4 0.60Down
Salivary gland101 ± 24 of 4 0.94None
Crop99 ± 44 of 4 0.90None
Midgut95 ± 104 of 4 0.90None
Tubule87 ± 64 of 4 0.80Down
Hindgut85 ± 24 of 4 0.80Down
Heart61 ± 54 of 4 0.57Down
Fat body86 ± 134 of 4 0.81Down
Ovary206 ± 64 of 4 1.90Up
Testis46 ± 04 of 4 0.40Down
Male accessory glands110 ± 54 of 4 1.00None
Virgin spermatheca135 ± 124 of 4 1.26None
Mated spermatheca187 ± 204 of 4 1.75Up
Adult carcass60 ± 44 of 4 0.60Down
Larval CNS204 ± 104 of 4 1.90Up
Larval Salivary gland279 ± 84 of 4 2.61Up
Larval midgut97 ± 04 of 4 0.91None
Larval tubule108 ± 44 of 4 1.00None
Larval hindgut182 ± 44 of 4 1.70Up
Larval fat body115 ± 81 of 4 1.10None
Larval trachea149 ± 114 of 4 1.39Up
Larval carcass112 ± 64 of 4 1.05None
S2 cells (growing)134 ± 54 of 4 1.26Up
Whole fly107 ± 34 of 4

Looking for CG5871-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime