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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5874-RA through 18771 annotations produced 1 hits



CG5874 (Nelf-A):

Annotation Number : CG5874
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038872
Gbrowse : chr3R:17049425-17055234 (+) // 100.0 //
Probeset : 1631550_at
Accessions : protein= NP_650958;, nucleotide= NM_142701;
Pathway : 0005634 // nucleus // inferred from electronic annotation /// 0017053 // transcriptional repressor complex // inferred f
Interpro : 0003723 // RNA binding // inferred from sequence or structural similarity /// 0003729 // mRNA binding // inferred from s
FlyMine data for FBgn0038872.
BioGrid reports that CG5874 interacts with CG8942 .
TRiP has 1 RNAi stocks for FBgn0038872 available for purchase.
VDRC has 3 RNAi stocks for FBgn0038872 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain285 ± 54 of 4 2.30Up
Head109 ± 44 of 4 0.90None
Eye100 ± 44 of 4 0.80Down
Thoracicoabdominal ganglion218 ± 64 of 4 1.80Up
Salivary gland140 ± 34 of 4 1.12None
Crop89 ± 24 of 4 0.70Down
Midgut55 ± 24 of 4 0.40Down
Tubule93 ± 44 of 4 0.80Down
Hindgut73 ± 34 of 4 0.60Down
Heart50 ± 34 of 4 0.40Down
Fat body57 ± 84 of 4 0.46Down
Ovary324 ± 34 of 4 2.60Up
Testis37 ± 24 of 4 0.30Down
Male accessory glands109 ± 24 of 4 0.90None
Virgin spermatheca65 ± 24 of 4 0.52Down
Mated spermatheca86 ± 84 of 4 0.69Down
Adult carcass69 ± 04 of 4 0.60Down
Larval CNS290 ± 134 of 4 2.33Up
Larval Salivary gland194 ± 54 of 4 1.56Up
Larval midgut60 ± 34 of 4 0.48Down
Larval tubule50 ± 14 of 4 0.40Down
Larval hindgut72 ± 34 of 4 0.58Down
Larval fat body53 ± 44 of 4 0.40Down
Larval trachea84 ± 114 of 4 0.68Down
Larval carcass78 ± 14 of 4 0.63Down
S2 cells (growing)163 ± 34 of 4 1.32Up
Whole fly124 ± 74 of 4

Looking for CG5874-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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