FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG5880-RA through 18771 annotations produced 1 hits

(CG5880):

Annotation Number : CG5880
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039489
Gbrowse : chr3R:22942504-22944259 (+) // 100.0 //
Probeset : 1639092_at
Accessions : protein= NP_651539;, nucleotide= NM_143282;
Interpro : 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from ele
FlyMine data for FBgn0039489.
BDGP gene expression has embryonic in situ data for CG5880: 4 pix of staining in 1 body parts.
Homophila reports that CG5880 is a close match (4e-11) to human gene (NP_057116), a gene associated with .
TRiP has 1 RNAi stocks for FBgn0039489 available for purchase.
VDRC has 2 RNAi stocks for FBgn0039489 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	79 ± 1	4 of 4	1.30	Up
Head	41 ± 3	4 of 4	0.70	Down
Eye	46 ± 0	4 of 4	0.75	Down
Thoracicoabdominal ganglion	96 ± 5	4 of 4	1.50	Up
Salivary gland	58 ± 5	4 of 4	0.93	None
Crop	35 ± 0	4 of 4	0.60	Down
Midgut	52 ± 0	4 of 4	0.80	None
Tubule	36 ± 3	4 of 4	0.60	Down
Hindgut	45 ± 1	4 of 4	0.70	Down
Heart	35 ± 2	4 of 4	0.57	Down
Fat body	37 ± 6	4 of 4	0.60	Down
Ovary	160 ± 4	4 of 4	2.60	Up
Testis	12 ± 1	4 of 4	0.20	Down
Male accessory glands	35 ± 4	4 of 4	0.60	Down
Virgin spermatheca	65 ± 2	4 of 4	1.05	None
Mated spermatheca	59 ± 1	4 of 4	0.95	None
Adult carcass	25 ± 3	3 of 4	0.40	Down
Larval CNS	66 ± 4	4 of 4	1.06	None
Larval Salivary gland	58 ± 4	4 of 4	0.93	None
Larval midgut	48 ± 4	4 of 4	0.78	None
Larval tubule	29 ± 2	4 of 4	0.50	Down
Larval hindgut	46 ± 3	4 of 4	0.74	Down
Larval fat body	38 ± 4	4 of 4	0.60	Down
Larval trachea	35 ± 1	4 of 4	0.56	Down
Larval carcass	27 ± 1	4 of 4	0.44	Down
S2 cells (growing)	84 ± 2	4 of 4	1.36	Up
Whole fly	62 ± 4	4 of 4

Looking for CG5880-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720