FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG5886-RA through 18771 annotations produced 1 hits

(CG5886):

Annotation Number : CG5886
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039379
Gbrowse : chr3R:21677375-21679723 (+) // 99.79 //
Probeset : 1641692_at
Accessions : protein= NP_651435;, nucleotide= NM_143178;
FlyMine data for FBgn0039379.
BDGP gene expression has embryonic in situ data for CG5886: 32 pix of staining in 6 body parts.
VDRC has 2 RNAi stocks for FBgn0039379 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	111 ± 9	4 of 4	0.60	Down
Head	53 ± 2	2 of 4	0.30	Down
Eye	51 ± 5	4 of 4	0.28	Down
Thoracicoabdominal ganglion	79 ± 4	4 of 4	0.40	Down
Salivary gland	77 ± 6	2 of 4	0.41	Down
Crop	141 ± 15	4 of 4	0.80	None
Midgut	40 ± 3	4 of 4	0.20	Down
Tubule	51 ± 3	4 of 4	0.30	Down
Hindgut	81 ± 5	4 of 4	0.40	Down
Heart	57 ± 6	4 of 4	0.31	Down
Fat body	44 ± 4	4 of 4	0.24	Down
Ovary	328 ± 3	4 of 4	1.80	Up
Testis	997 ± 12	4 of 4	5.30	Up
Male accessory glands	95 ± 4	4 of 4	0.50	Down
Virgin spermatheca	98 ± 3	4 of 4	0.53	Down
Mated spermatheca	91 ± 9	4 of 4	0.49	Down
Adult carcass	50 ± 2	3 of 4	0.30	Down
Larval CNS	191 ± 15	4 of 4	1.02	None
Larval Salivary gland	171 ± 14	4 of 4	0.92	None
Larval midgut	48 ± 4	4 of 4	0.26	Down
Larval tubule	56 ± 4	4 of 4	0.30	Down
Larval hindgut	90 ± 6	4 of 4	0.49	Down
Larval fat body	183 ± 70	4 of 4	1.00	None
Larval trachea	98 ± 7	4 of 4	0.53	Down
Larval carcass	249 ± 26	4 of 4	1.34	None
S2 cells (growing)	111 ± 6	4 of 4	0.60	Down
Whole fly	186 ± 13	4 of 4

Looking for CG5886-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720