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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG5888-RA through 18771 annotations produced 1 hits


Annotation Number : CG5888
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028523
Gbrowse : chr2L:16400168-16448465 (-) // 100.0 //
Probeset : 1635109_at
Accessions : protein= NP_609794;, nucleotide= NM_135950;
Interpro : 0004888 // transmembrane receptor activity // inferred from sequence or structural similarity
FlyMine data for FBgn0028523.
BDGP gene expression has embryonic in situ data for BG:DS02780.1: 69 pix of staining in 12 body parts.
VDRC has 1 RNAi stocks for FBgn0028523 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain321 134 of 4 7.60Up
Head179 104 of 4 4.30Up
Eye141 24 of 4 3.35Up
Thoracicoabdominal ganglion532 304 of 412.60Up
Salivary gland62 34 of 4 1.49None
Crop10 12 of 4 0.30Down
Midgut3 20 of 4 0.10Down
Tubule29 113 of 4 0.70None
Hindgut16 13 of 4 0.40Down
Heart100 34 of 4 2.38Up
Fat body12 31 of 4 0.30Down
Ovary31 14 of 4 0.70None
Testis17 04 of 4 0.40None
Male accessory glands8 21 of 4 0.20Down
Virgin spermatheca11 21 of 4 0.27Down
Mated spermatheca17 41 of 4 0.40Down
Adult carcass45 64 of 4 1.10None
Larval CNS235 174 of 4 5.60Up
Larval Salivary gland6 20 of 4 0.16Down
Larval midgut5 10 of 4 0.14Down
Larval tubule14 24 of 4 0.40Down
Larval hindgut12 12 of 4 0.29Down
Larval fat body29 64 of 4 0.70None
Larval trachea84 124 of 4 2.02Up
Larval carcass44 44 of 4 1.07None
S2 cells (growing)769 84 of 418.28Up
Whole fly42 84 of 4

Looking for CG5888-RA. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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