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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5892-RA through 18771 annotations produced 1 hits



(CG5892):

Annotation Number : CG5892
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038873
Gbrowse : chr3R:17068350-17071140 (+) // 100.0 //
Probeset : 1640542_at
Accessions : protein= NP_650959;, nucleotide= NM_142702;
Interpro : "0008415 // acyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // infer
FlyMine data for FBgn0038873.
VDRC has 3 RNAi stocks for FBgn0038873 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 10 of 4 0.40None
Head2 ± 10 of 4 0.50None
Eye2 ± 10 of 4 0.36Down
Thoracicoabdominal ganglion0 ± 00 of 4 0.20Down
Salivary gland4 ± 20 of 4 0.83None
Crop2 ± 00 of 4 0.40Down
Midgut24 ± 24 of 4 4.20Up
Tubule2 ± 00 of 4 0.40Down
Hindgut2 ± 00 of 4 0.40Down
Heart0 ± 00 of 4 0.16Down
Fat body1 ± 00 of 4 0.30Down
Ovary0 ± 00 of 4 0.10Down
Testis2 ± 00 of 4 0.50None
Male accessory glands6 ± 20 of 4 1.00None
Virgin spermatheca4 ± 10 of 4 0.74None
Mated spermatheca1 ± 00 of 4 0.26Down
Adult carcass5 ± 10 of 4 1.00None
Larval CNS0 ± 00 of 4 0.09Down
Larval Salivary gland3 ± 10 of 4 0.54None
Larval midgut194 ± 174 of 433.67Up
Larval tubule2 ± 00 of 4 0.40Down
Larval hindgut1 ± 00 of 4 0.18Down
Larval fat body3 ± 20 of 4 0.50None
Larval trachea1 ± 10 of 4 0.29Down
Larval carcass1 ± 00 of 4 0.28Down
S2 cells (growing)2 ± 00 of 4 0.36Down
Whole fly5 ± 11 of 4

Looking for CG5892-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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