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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5909-RA through 18771 annotations produced 1 hits



(CG5909):

Annotation Number : CG5909
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039495
Gbrowse : chr3R:22986873-22988642 (+) // 100.0 //
Probeset : 1640983_at
Accessions : protein= NP_651544;, nucleotide= NM_143287;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0039495.
Homophila reports that CG5909 is a close match (4e-11) to human gene BF;CFB;GBG (NP_001701), a gene associated with {Macular degeneration, age-related, reduced risk of}, 603075 (3).
VDRC has 3 RNAi stocks for FBgn0039495 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.10Down
Head91 74 of 4 6.50Up
Eye147 144 of 410.42Up
Thoracicoabdominal ganglion2 10 of 4 0.20Down
Salivary gland3 00 of 4 0.22Down
Crop74 54 of 4 5.20Up
Midgut1 00 of 4 0.10Down
Tubule4 00 of 4 0.30Down
Hindgut8 10 of 4 0.60None
Heart8 00 of 4 0.61Down
Fat body6 40 of 4 0.45Down
Ovary0 00 of 4 0.00Down
Testis3 10 of 4 0.20Down
Male accessory glands1 00 of 4 0.10Down
Virgin spermatheca2 10 of 4 0.20Down
Mated spermatheca4 10 of 4 0.33Down
Adult carcass100 54 of 4 7.10Up
Larval CNS0 00 of 4 0.06Down
Larval Salivary gland1 00 of 4 0.09Down
Larval midgut2 10 of 4 0.18Down
Larval tubule3 10 of 4 0.20Down
Larval hindgut2 10 of 4 0.15Down
Larval fat body0 00 of 4 0.10Down
Larval trachea4 40 of 4 0.33Down
Larval carcass14 33 of 4 1.03None
S2 cells (growing)1 00 of 4 0.11Down
Whole fly14 12 of 4

Looking for CG5909-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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