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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5911-RA through 18771 annotations produced 1 hits



chr3R:17085222-17090693 (+) // 100.0 // (ETHR):

Annotation Number : CG5911
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1625003_at
Accessions : protein= , nucleotide= NP_650960; /// NP_996255;
Pathway : 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein
Interpro : 0016021 // integral to membrane // inferred from sequence or structural similarity /// 0016021 // integral to membrane /
FlyMine data for full length.
Homophila reports that CG5911 is a close match (5e-11) to human gene CCR2;CMKBR2 (NP_000639), a gene associated with {HIV infection, susceptibility/resistance to} (3).


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain13 11 of 410.50Up
Head7 10 of 4 5.60Up
Eye3 10 of 4 2.51None
Thoracicoabdominal ganglion4 20 of 4 3.10None
Salivary gland7 10 of 4 5.26Up
Crop8 10 of 4 6.20Up
Midgut1 00 of 4 1.20None
Tubule3 00 of 4 2.60Up
Hindgut12 00 of 4 9.20Up
Heart6 20 of 4 4.83None
Fat body2 10 of 4 2.02None
Ovary1 00 of 4 0.90None
Testis2 10 of 4 1.70None
Male accessory glands5 20 of 4 3.80None
Virgin spermatheca2 00 of 4 1.64None
Mated spermatheca1 00 of 4 1.26None
Adult carcass1 00 of 4 1.10None
Larval CNS8 10 of 4 6.11Up
Larval Salivary gland68 44 of 451.68Up
Larval midgut1 00 of 4 0.83None
Larval tubule2 10 of 4 2.20None
Larval hindgut20 11 of 415.47Up
Larval fat body2 10 of 4 2.10None
Larval trachea15 10 of 411.81Up
Larval carcass5 20 of 4 3.77None
S2 cells (growing)26 23 of 419.68Up
Whole fly1 00 of 4

Looking for CG5911-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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