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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5915-RA through 18771 annotations produced 1 hits



Rab-protein 7 (Rab7):

Annotation Number : CG5915
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0015795
Gbrowse : chr3R:19818731-19821266 (+) // 100.0 //
Probeset : 1632429_at
Accessions : protein= NP_524472;, nucleotide= NM_079748;
Pathway : 0005770 // late endosome // inferred from direct assay /// 0005811 // lipid particle // inferred from direct assay
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from seq
FlyMine data for FBgn0015795.
BDGP gene expression has embryonic in situ data for Rab7: 4 pix of staining in 1 body parts.
Homophila reports that CG5915 is a close match (2e-11) to human gene RAC2 (NP_002863), a gene associated with Neutrophil immunodeficiency syndrome, 608203 (3).
BioGrid reports that CG5915 interacts with CG7146 .
TRiP has 1 RNAi stocks for FBgn0015795 available for purchase.
VDRC has 2 RNAi stocks for FBgn0015795 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1056 384 of 4 1.10None
Head1375 824 of 4 1.40Up
Eye1831 574 of 4 1.86Up
Thoracicoabdominal ganglion1363 294 of 4 1.40Up
Salivary gland3324 924 of 4 3.38Up
Crop2215 334 of 4 2.30Up
Midgut1750 554 of 4 1.80Up
Tubule2430 504 of 4 2.50Up
Hindgut1625 584 of 4 1.70Up
Heart2117 424 of 4 2.15Up
Fat body1737 1744 of 4 1.76Up
Ovary843 264 of 4 0.90None
Testis457 134 of 4 0.50Down
Male accessory glands1990 484 of 4 2.00Up
Virgin spermatheca2833 1394 of 4 2.88Up
Mated spermatheca2731 1164 of 4 2.77Up
Adult carcass1358 204 of 4 1.40Up
Larval CNS812 674 of 4 0.83None
Larval Salivary gland1545 844 of 4 1.57Up
Larval midgut2060 2304 of 4 2.09Up
Larval tubule3349 514 of 4 3.40Up
Larval hindgut1725 1004 of 4 1.75Up
Larval fat body2208 2394 of 4 2.20Up
Larval trachea1232 1254 of 4 1.25None
Larval carcass1508 984 of 4 1.53Up
S2 cells (growing)1424 514 of 4 1.45Up
Whole fly984 834 of 4

Looking for CG5915-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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