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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5923-RA through 18771 annotations produced 1 hits



DNA polymerase 73K (DNApol-alpha73):

Annotation Number : CG5923
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0005696
Gbrowse : chr3R:23064814-23066952 (+) // 100.0 //
Probeset : 1628372_a_at
Accessions : protein= NP_733206;, nucleotide= NM_170327;
Pathway : 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // inferred from sequence or structural
Interpro : 0003677 // DNA binding // inferred from electronic annotation /// 0003887 // DNA-directed DNA polymerase activity // inf
FlyMine data for FBgn0005696.
BioGrid reports that CG5923 interacts with CG6349 CG7045 CG7570 CG8942 CG9653 .
VDRC has 1 RNAi stocks for FBgn0005696 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain10 10 of 4 0.10Down
Head11 20 of 4 0.10Down
Eye8 10 of 4 0.07Down
Thoracicoabdominal ganglion12 11 of 4 0.10Down
Salivary gland18 50 of 4 0.15Down
Crop12 20 of 4 0.10Down
Midgut17 21 of 4 0.10Down
Tubule14 11 of 4 0.10Down
Hindgut15 20 of 4 0.10Down
Heart6 10 of 4 0.05Down
Fat body14 10 of 4 0.11Down
Ovary252 94 of 4 2.00Up
Testis12 11 of 4 0.10Down
Male accessory glands15 20 of 4 0.10Down
Virgin spermatheca10 11 of 4 0.09Down
Mated spermatheca10 10 of 4 0.08Down
Adult carcass21 11 of 4 0.20Down
Larval CNS76 44 of 4 0.61Down
Larval Salivary gland56 54 of 4 0.45Down
Larval midgut15 03 of 4 0.13Down
Larval tubule16 12 of 4 0.10Down
Larval hindgut21 13 of 4 0.17Down
Larval fat body18 30 of 4 0.10Down
Larval trachea33 34 of 4 0.27Down
Larval carcass40 14 of 4 0.32Down
S2 cells (growing)93 54 of 4 0.75None
Whole fly124 124 of 4

Looking for CG5923-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime