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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5925-RA through 18771 annotations produced 1 hits



desaturase2 (desat2):

Annotation Number : CG5925
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0043043
Gbrowse : chr3R:8262142-8263481 (+) // 100.0 //
Probeset : 1637550_at
Accessions : protein= NP_650201;, nucleotide= NM_141944;
Pathway : 0016021 // integral to membrane // inferred from electronic annotation
Interpro : "0004768 // stearoyl-CoA 9-desaturase activity // non-traceable author statement /// 0004768 // stearoyl-CoA 9-desaturas
FlyMine data for FBgn0043043.
VDRC has 1 RNAi stocks for FBgn0043043 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain9 00 of 4 1.00None
Head15 10 of 4 1.70None
Eye3 10 of 4 0.43None
Thoracicoabdominal ganglion13 10 of 4 1.50None
Salivary gland14 40 of 4 1.55None
Crop8 20 of 4 0.90None
Midgut15 20 of 4 1.70None
Tubule8 10 of 4 1.00None
Hindgut17 22 of 4 1.80None
Heart10 13 of 4 1.11None
Fat body20 122 of 4 2.24None
Ovary6 10 of 4 0.70None
Testis2 00 of 4 0.30None
Male accessory glands11 50 of 4 1.30None
Virgin spermatheca16 22 of 4 1.78None
Mated spermatheca16 01 of 4 1.74None
Adult carcass23 30 of 4 2.60Up
Larval CNS10 31 of 4 1.11None
Larval Salivary gland13 02 of 4 1.49None
Larval midgut19 31 of 4 2.14None
Larval tubule10 10 of 4 1.10None
Larval hindgut11 10 of 4 1.22None
Larval fat body8 30 of 4 1.00None
Larval trachea6 60 of 4 0.72None
Larval carcass17 00 of 4 1.89None
S2 cells (growing)16 10 of 4 1.79None
Whole fly9 30 of 4

Looking for CG5925-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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