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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5932-RA through 18771 annotations produced 1 hits



(CG5932):

Annotation Number : CG5932
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036996
Gbrowse : chr3L:20453798-20455374 (+) // 100.0 //
Probeset : 1636583_at
Accessions : protein= NP_649229;, nucleotide= NM_140972;
Interpro : 0004806 // triglyceride lipase activity // inferred from sequence or structural similarity /// 0004806 // triglyceride l
FlyMine data for FBgn0036996.
BDGP gene expression has embryonic in situ data for CG5932: 4 pix of staining in 1 body parts.
Homophila reports that CG5932 is a close match (1e-54) to human gene LIPA (NP_000226), a gene associated with Cholesteryl ester storage disease (3);Wolman disease (3).
VDRC has 1 RNAi stocks for FBgn0036996 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 ± 21 of 4 0.00Down
Head8 ± 30 of 4 0.00Down
Eye18 ± 101 of 4 0.07Down
Thoracicoabdominal ganglion7 ± 10 of 4 0.00Down
Salivary gland25 ± 10 of 4 0.10Down
Crop11 ± 21 of 4 0.00Down
Midgut2959 ± 3074 of 411.60Up
Tubule12 ± 00 of 4 0.10Down
Hindgut18 ± 21 of 4 0.10Down
Heart1 ± 00 of 4 0.01Down
Fat body11 ± 50 of 4 0.04Down
Ovary6 ± 00 of 4 0.00Down
Testis6 ± 12 of 4 0.00Down
Male accessory glands11 ± 00 of 4 0.00Down
Virgin spermatheca14 ± 11 of 4 0.06Down
Mated spermatheca11 ± 10 of 4 0.05Down
Adult carcass13 ± 00 of 4 0.10Down
Larval CNS11 ± 13 of 4 0.04Down
Larval Salivary gland8 ± 20 of 4 0.03Down
Larval midgut5722 ± 1914 of 422.42Up
Larval tubule14 ± 21 of 4 0.10Down
Larval hindgut14 ± 23 of 4 0.06Down
Larval fat body16 ± 11 of 4 0.10Down
Larval trachea3 ± 40 of 4 0.01Down
Larval carcass17 ± 13 of 4 0.07Down
S2 cells (growing)9 ± 11 of 4 0.04Down
Whole fly255 ± 194 of 4

Looking for CG5932-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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