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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5938-RB through 18771 annotations produced 1 hits



(CG5938):

Annotation Number : CG5938
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0046247
Gbrowse : chr3R:23100428-23102868 (+) // 100.0 //
Probeset : 1633997_s_at
Accessions : protein= NP_001097947; /// NP_651553; /// NP_733210; /// NP_733211; /// NP_733212;, nucleotide= NM_001104477; /// NM_143296; /// NM_170331; /// NM_170332; /// NM_170333;
FlyMine data for FBgn0046247.
BioGrid reports that CG5938 interacts with CG7238 .
VDRC has 3 RNAi stocks for FBgn0046247 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain436 84 of 4 2.00Up
Head241 134 of 4 1.10None
Eye287 124 of 4 1.30Up
Thoracicoabdominal ganglion401 154 of 4 1.80Up
Salivary gland356 244 of 4 1.61Up
Crop363 44 of 4 1.60Up
Midgut269 84 of 4 1.20Up
Tubule696 264 of 4 3.10Up
Hindgut403 54 of 4 1.80Up
Heart267 54 of 4 1.21Up
Fat body214 174 of 4 0.97None
Ovary338 64 of 4 1.50Up
Testis318 74 of 4 1.40Up
Male accessory glands105 24 of 4 0.50Down
Virgin spermatheca183 54 of 4 0.83Down
Mated spermatheca179 44 of 4 0.81Down
Adult carcass247 74 of 4 1.10None
Larval CNS174 94 of 4 0.79Down
Larval Salivary gland103 34 of 4 0.47Down
Larval midgut126 64 of 4 0.57Down
Larval tubule252 24 of 4 1.10Up
Larval hindgut139 24 of 4 0.63Down
Larval fat body214 104 of 4 1.00None
Larval trachea193 234 of 4 0.87None
Larval carcass189 204 of 4 0.85None
S2 cells (growing)106 14 of 4 0.48Down
Whole fly221 84 of 4

Looking for CG5938-RB. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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