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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5940-RA through 18771 annotations produced 1 hits



chr3L:11820296-11826677 (-) // 100.0 // (cyclin A):

Annotation Number : CG5940
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1639195_a_at
Accessions : protein= , nucleotide= NP_524030; /// NP_729756;
Pathway : "0000070 // mitotic sister chromatid segregation // inferred from mutant phenotype /// 0000086 // G2/M transition of mit
Interpro : embryonic // inferred from mutant phenotype /// 0009794 // regulation of mitotic cell cycle
FlyMine data for full length.
Homophila reports that CG5940 is a close match (2e-12) to human gene BCL1;CCND1;PRAD1 (NP_444284), a gene associated with Centrocytic lymphoma (2);Leukemia/lymphoma, chronic B-cell, 151400 (3);Multiple myeloma, 254500 (2);Parathyroid adenomatosis 1 (2);von Hippel-Lindau disease, modification of, 193300 (3);{Colorectal cancer, susceptibility to} (3).
BioGrid reports that CG5940 interacts with CG9071 CG11579 CG10422 CG3510 CG3510 CG3510 CG3510 CG3510 CG3510 CG3510 CG3510 CG3510 CG3510 CG3510 CG3510 CG3938 CG6376 CG10800 CG10800 CG6147 CG5363 CG5363 CG5363 CG5363 CG5363 CG5363 CG5363 CG5363 CG5363 CG5363 CG4974 CG7425 CG6975 CG4252 CG3779 CG3779 CG11420 CG4336 CG4336 CG4336 CG4336 CG4336 CG4336 CG4336 CG4336 CG4336 CG4336 CG4336 CG4336 CG1034 CG5825 CG7296 CG17508 CG31204 CG5708 CG11182 CG2944 CG13806 CG5473 CG31000 CG5568 CG5731 CG31679 CG12723 CG31811 CG9930 CG15112 CG4184 CG10571 CG1765 CG8181 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain13 04 of 4 0.00Down
Head17 24 of 4 0.00Down
Eye10 03 of 4 0.01Down
Thoracicoabdominal ganglion19 24 of 4 0.00Down
Salivary gland28 62 of 4 0.02Down
Crop20 24 of 4 0.00Down
Midgut35 24 of 4 0.00Down
Tubule39 291 of 4 0.00Down
Hindgut15 13 of 4 0.00Down
Heart11 23 of 4 0.01Down
Fat body34 174 of 4 0.02Down
Ovary2641 454 of 4 1.90Up
Testis261 94 of 4 0.20Down
Male accessory glands15 23 of 4 0.00Down
Virgin spermatheca35 24 of 4 0.03Down
Mated spermatheca20 34 of 4 0.01Down
Adult carcass87 374 of 4 0.10Down
Larval CNS748 814 of 4 0.54Down
Larval Salivary gland75 54 of 4 0.05Down
Larval midgut51 74 of 4 0.04Down
Larval tubule19 24 of 4 0.00Down
Larval hindgut88 24 of 4 0.06Down
Larval fat body101 164 of 4 0.10Down
Larval trachea188 324 of 4 0.14Down
Larval carcass85 84 of 4 0.06Down
S2 cells (growing)637 84 of 4 0.46Down
Whole fly1386 654 of 4

Looking for CG5940-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime