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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG5942-RC through 18771 annotations produced 1 hits


Complementation group 3.5 (brm):

Annotation Number : CG5942
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000212
Gbrowse : chr3L:15963183-15975969 (-) // 100.0 //
Probeset : 1636831_s_at
Accessions : protein= NP_536745; /// NP_536746; /// NP_730088; /// NP_730089;, nucleotide= NM_080497; /// NM_080498; /// NM_168640; /// NM_168641;
Pathway : engulfment // inferred from mutant phenotype /// 0007275 // multicellular organismal development // inferred from elect
Interpro : 0005634 // nucleus // non-traceable author statement /// 0005634 // nucleus // inferred from electronic annotation /// 0
FlyMine data for FBgn0000212.
Homophila reports that CG5942 is a close match (9e-16) to human gene ATRX;MRXHF1;SFM1;SHS;XH2;XNP (NP_000480), a gene associated with Alpha-thalassemia myelodysplasia syndrome, somatic, 300448 (3);Alpha-thalassemia/mental retardation syndrome, 301040 (3);Mental retardation-hypotonic facies syndrome, X-linked, 309580 (3).
BioGrid reports that CG5942 interacts with CG1028 CG3938 CG3938 CG4654 CG6502 CG6376 CG32443 CG32443 CG5109 CG9375 CG1064 CG1064 CG9383 CG9383 CG5942 CG9696 CG4637 CG4637 CG1594 CG32491 CG12058 CG7467 CG7467 CG7467 CG7467 CG7467 CG7467 CG18085 CG2621 CG6889 CG6889 CG7958 CG8651 CG8651 CG8651 CG8651 CG8651 CG8651 CG8651 CG8651 CG8651 CG8651 CG8651 CG8651 CG8651 CG8651 CG2759 CG18740 CG7055 CG4303 CG6546 CG7803 CG18740 CG7055 .
TRiP has 3 RNAi stocks for FBgn0000212 available for purchase.
VDRC has 2 RNAi stocks for FBgn0000212 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain473 ± 164 of 4 1.70Up
Head243 ± 104 of 4 0.90None
Eye170 ± 44 of 4 0.60Down
Thoracicoabdominal ganglion496 ± 124 of 4 1.70Up
Salivary gland541 ± 104 of 4 1.91Up
Crop298 ± 94 of 4 1.10None
Midgut173 ± 34 of 4 0.60Down
Tubule580 ± 44 of 4 2.00Up
Hindgut276 ± 94 of 4 1.00None
Heart140 ± 34 of 4 0.50Down
Fat body160 ± 244 of 4 0.57Down
Ovary729 ± 94 of 4 2.60Up
Testis54 ± 34 of 4 0.20Down
Male accessory glands343 ± 174 of 4 1.20Up
Virgin spermatheca307 ± 74 of 4 1.08None
Mated spermatheca350 ± 254 of 4 1.23None
Adult carcass181 ± 24 of 4 0.60Down
Larval CNS1031 ± 644 of 4 3.63Up
Larval Salivary gland777 ± 234 of 4 2.74Up
Larval midgut148 ± 64 of 4 0.52Down
Larval tubule476 ± 284 of 4 1.70Up
Larval hindgut296 ± 24 of 4 1.04None
Larval fat body186 ± 104 of 4 0.70Down
Larval trachea393 ± 254 of 4 1.39Up
Larval carcass405 ± 194 of 4 1.43Up
S2 cells (growing)554 ± 104 of 4 1.95Up
Whole fly283 ± 144 of 4

Looking for CG5942-RC. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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