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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG5945-RA through 18771 annotations produced 1 hits


Annotation Number : CG5945
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032494
Gbrowse : chr2L:13240132-13241763 (+) // 100.0 //
Probeset : 1624423_at
Accessions : protein= NP_609626;, nucleotide= NM_135782;
FlyMine data for FBgn0032494.
BDGP gene expression has embryonic in situ data for CG5945: 4 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0032494 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain41 44 of 4 0.10Down
Head3004 1484 of 4 3.60Up
Eye2835 2224 of 4 3.44Up
Thoracicoabdominal ganglion43 164 of 4 0.10Down
Salivary gland32 112 of 4 0.04Down
Crop55 54 of 4 0.10Down
Midgut225 144 of 4 0.30Down
Tubule7 11 of 4 0.00Down
Hindgut89 104 of 4 0.10Down
Heart1020 2084 of 4 1.24None
Fat body114 264 of 4 0.14Down
Ovary1 00 of 4 0.00Down
Testis3 11 of 4 0.00Down
Male accessory glands14 10 of 4 0.00Down
Virgin spermatheca1225 704 of 4 1.48Up
Mated spermatheca1283 1224 of 4 1.55Up
Adult carcass4810 2714 of 4 5.80Up
Larval CNS3 11 of 4 0.00Down
Larval Salivary gland1 00 of 4 0.00Down
Larval midgut12 30 of 4 0.02Down
Larval tubule3 00 of 4 0.00Down
Larval hindgut3 10 of 4 0.00Down
Larval fat body6 10 of 4 0.00Down
Larval trachea97 584 of 4 0.12Down
Larval carcass1 00 of 4 0.00Down
S2 cells (growing)2 00 of 4 0.00Down
Whole fly825 674 of 4

Looking for CG5945-RA. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime