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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5961-RA through 18771 annotations produced 1 hits



(CG5961):

Annotation Number : CG5961
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038056
Gbrowse : chr3R:8284140-8285922 (-) // 100.0 //
Probeset : 1639914_at
Accessions : protein= NP_650206;, nucleotide= NM_141949;
FlyMine data for FBgn0038056.
BDGP gene expression has embryonic in situ data for CG5961: 24 pix of staining in 5 body parts.
TRiP has 1 RNAi stocks for FBgn0038056 available for purchase.
VDRC has 3 RNAi stocks for FBgn0038056 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain168 ± 34 of 4 2.00Up
Head115 ± 34 of 4 1.40None
Eye57 ± 14 of 4 0.68None
Thoracicoabdominal ganglion172 ± 64 of 4 2.10Up
Salivary gland86 ± 34 of 4 1.04None
Crop164 ± 44 of 4 2.00Up
Midgut111 ± 64 of 4 1.30None
Tubule95 ± 44 of 4 1.10Up
Hindgut119 ± 34 of 4 1.40None
Heart38 ± 34 of 4 0.46Down
Fat body38 ± 54 of 4 0.45Down
Ovary77 ± 84 of 4 0.90None
Testis11 ± 02 of 4 0.10Down
Male accessory glands93 ± 64 of 4 1.10None
Virgin spermatheca100 ± 54 of 4 1.20None
Mated spermatheca134 ± 134 of 4 1.61Up
Adult carcass112 ± 34 of 4 1.30None
Larval CNS66 ± 54 of 4 0.79None
Larval Salivary gland36 ± 34 of 4 0.43Down
Larval midgut32 ± 14 of 4 0.39Down
Larval tubule59 ± 54 of 4 0.70None
Larval hindgut38 ± 14 of 4 0.46Down
Larval fat body40 ± 24 of 4 0.50Down
Larval trachea79 ± 64 of 4 0.95None
Larval carcass40 ± 54 of 4 0.48Down
S2 cells (growing)138 ± 74 of 4 1.65Up
Whole fly83 ± 134 of 4

Looking for CG5961-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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